SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2611

Length: 3075 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2611
ATGGGGGGAGGCTGTAGAACAAGAAGCGGACTGGTACAAGCTTCGAGCGGGGGGCTGACTTATCTGCAAATCGGGGGAGTATGGTAAGGTTGCTTCAAGTGTACGGCCACGCTTAGGTTGGGCCTCTGGTGGTGAAGCAACACATCCATATTTATACATACATATATATACTCCTGGAAAAATACTAACAAAAAATGAAAATCCGAGATTTCGCGGTGCTTTGCTAGGGTTTGAAGTTCTGCCATAAAGCCAGCAGTCAATGGCCAAGTGAGAAAATCAAGGAAGCAAACGAAGCACAGGGTTTTCATTGCCTTTGTTAGGATTTTTCGGAATTTTCATCATCAAGCGATACAGAGGAGTTTCATGGCGTGGCAGGGTTTGAAGACTCCGCGAAGCATAGACCTCTAATGAAATGACAGACGGGAAAGGTCAGCCAAGTTATGCCGCGTTAGGGTTTTGAAGCCGCGGCGTTCTGGCGGAAAATAAATGGGGAACTGCTGCGGATCTGGCGGAGGATCCAAGACTGTACGAAAGGAACGCAGGCCGAATCCGTTCTCGCAGGACTTTAACCCTGCCGGAGCACCCCGGGTTTCGGTTTTGAAAGGAGCGGCCGTTGGACGCAACATACATGATAAGTATGTGCTGGGAAGAGAGCTCGGCAGGGGTGAGTTCGGCATTACTTACCTTTGTACTGACAAGGAGACTGAAGAAATGCTTGCCTGCAAGTCTATTTCCAAGCGGAAGCTCAGAACTGCGATAGATATCGAGGATGTGAGGCGAGAAGTAGCTATAATGAACAATTTGCCTCAGCATCCGAACATTGTTACCTTGAAAGCTACGTACGAGGACGACCACGCTGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGAGAGCTATTTGACAGGATCGTTGCTAGAGGGCATTACAGCGAGCGTGCCGCGGCTGCTGTTACACGTACTATTGTTGAAGTTGTTCAGATGTGTCACAAAAACGGGGTGATGCATCGGGACCTCAAACCTGAGAATTTTCTGTTTGCGAATAAAAAAGAGAATTCAGCTTTGAAGGCTATTGATTTCGGTCTTTCTGTGTTCTTTAAGCCAGGCGAGCGATTTTCTGAAATAGTGGGTAGTCCATATTACATGGCACCAGAAGTCCTGAAGCGGAACTATGGACCAGAGGTTGATGTGTGGAGTGCAGGGGTCATTCTGTACATTTTATTGTGTGGAGTGCCACCATTCTGGGCTGAAACGGAGCAGGGGGTTGCGCAGGCCATTCTTCGGGGTCAGATAGATTTCAAAAGAGATCCATGGCCAAAAGTTTCTGAGCATGCCAAGGGTCTTGTCCGGCAGATGCTTGAGCCTGATCCTAAGATTCGGTTAACTGCTCAACAAGTGCTTGATCATCATTGGTTACAAAATGCCAAAAAGGCATCAAATGTTCCTCTGGGTGATGTGGTCAGATCAAGAATCAAGCAGTTCTCTATGATTAATAGGTTCAAAAAGAAAGCTTTAAGGGTAATTGCAGAACATTTGTCTGTTGAAGAAGCAGAGAGTATGAAAGAAATGTTCAAGAAGCTGGACATGAAGAACCATGGTACAATATCCTTTGAGGAACTCAAAGTGGGTCTTCAAAAGCTTGGCTCTCAATTATCGGAGCAAGAAGTGCAACTTTTAATGGAATCTGCGGATGTTGACAAGAATGGCATGCTAGATTATGGTGAATTTGTAGCGGTCGCAGTTCATTTGCAGCGAATGGACAATGATGAGCATTTGCACAAGGCATTTAAATTCTTTGACAAAAATGCCAGTGGCTATATTGAAGTTGATGAGCTTAAAGAAGCCTTGATTGATGACATTGCTGAAAATGCTGTAGAGGTGTTGAATGACATTGTCCGGGAAGTGGATACAGACAAGGATGGCCGCATCAGCTATGAAGAGTTTGTCGCAATGATGAAAACTGGTACTGACTGGAGAAAAGCCTCCCGGCATTATTCACGGAACAGGTTCAATAGCCTCAACATGAGATTGGTGAAGGATGGCTCATTGCAGCTGGTTAATGACGATAAAAGATAAATGTAGCTCTAGATGGATTGTATAGTATAAGAGTCCCAAGGAGACTAGTAGTTTCTATGGGCATTACTAATCATGATTTGATCTTAGAATTGTATTTCATTTTGTGCCTCTGCGGTTGTGTTCTTGATATTGTTGTGAGCCTTTTGTGGTGCCAAGGCTTTGCCTAAGTTCTAATGCAAGTTGTGTCTACAACGCACATGATAGCCAGCTGCATGTTTAAAGGGTGTTCATTTATGCATGCCGGGCCAGTCCTTGTGCAGTTGGAAGCTAATAATTCAATATGAAAGTTTGTGATCTGCAAGAACAGATTAATTTGAAGAATGAGGTTGCAGCTTTCTTTTCTTCTACCTGGTTGCCAGCTGGCCTTTAGATTAAGATACAGTTCATTTCCTCTTTGCTCGGGTCTGCTTCTGTTGCTGGAGAATACAAGGCTTGCTAAAGGTGACCAACTCCTGATTTGTTAGCATTTTATCCTTGCGTTCAGATGATTTCAGTTTTTAAAAATATAGTGTGTTTAATCATTACTTAGTATTTGGATGGTCAAACAAGTTTGCTGTCACTTCAGTGATTGCAGCATACTTGGACAGCATGTACTGTTATAATGAACACTTTTCCATGCTGTTTTTAAACATTTTCTCCACGGAAGGTTTCATACAATCTAGACTATGTCGTATGCCCTCTTTTGTTTTATATTCAGTCAGCAAAGGGAGATTAAGTTGAATTTAAAGGTAAGTAGGCTGGTAGTTTTCCATATGTACATGTAGAATTTTTGCGTTGTCTTTCTCATGTAGATAACTGATTCATTTATGACTTTCATTTGTTGACCACCAGAACTTTTTATAAATAGTTTGAGCAATACCTTTCTGGGTACCTAGTTTGAGCAATGCTAGCAACTGGAGCAAGCAATTTTTGTTGAAAGGGAAAATCTTTACTGTTTAGAAAGATTGCATTATATGTATGGGTTGAGATGAAATCATAGCCTGTTATTTTGAAAGAAAAAAG

Ace file of the UniGene sp_v1.1_unigene2611

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R931_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	calcium-dependent protein	-	-	87%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	87%
Blast2go	Calcium-binding EF-hand	IPR002048	-	87%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	87%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	87%
Blast2go	Protein kinase-like domain	IPR011009	-	87%
Blast2go	EF-hand-like domain	IPR011992	-	87%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	87%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	87%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	87%
Blast2go	EF-hand	IPR018248	-	87%
Blast2go	EF-HAND 2	IPR018249	-	87%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	87%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGNCCGSGGGSKTVRKERRPNPFSQDFNPAGAPRVSVLKGAAVGRNIHDKYVLGRELGRGEFGITYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIVARGHYSERAAAAVTRTIVEVVQMCHKNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAILRGQIDFKRDPWPKVSEHAKGLVRQMLEPDPKIRLTAQQVLDHHWLQNAKKASNVPLGDVVRSRIKQFSMINRFKKKALRVIAEHLSVEEAESMKEMFKKLDMKNHGTISFEELKVGLQKLGSQLSEQEVQLLMESADVDKNGMLDYGEFVAVAVHLQRMDNDEHLHKAFKFFDKNASGYIEVDELKEALIDDIAENAVEVLNDIVREVDTDKDGRISYEEFVAMMKTGTDWRKASRHYSRNRFNSLNMRLVKDGSLQLVNDDKR*

Protein Length: 530

Fln nts: ATGGGGGGAGGCTGTAGAACAAGAAGCGGACTGGTACAAGCTTCGAGCGGGGGGCTGACTTATCTGCAAATCGGGGGAGTATGGTAAGGTTGCTTCAAGTGTACGGCCACGCTTAGGTTGGGCCTCTGGTGGTGAAGCAACACATCCATATTTATACATACATATATATACTCCTGGAAAAATACTAACAAAAAATGAAAATCCGAGATTTCGCGGTGCTTTGCTAGGGTTTGAAGTTCTGCCATAAAGCCAGCAGTCAATGGCCAAGTGAGAAAATCAAGGAAGCAAACGAAGCACAGGGTTTTCATTGCCTTTGTTAGGATTTTTCGGAATTTTCATCATCAAGCGATACAGAGGAGTTTCATGGCGTGGCAGGGTTTGAAGACTCCGCGAAGCATAGACCTCTAATGAAATGACAGACGGGAAAGGTCAGCCAAGTTATGCCGCGTTAGGGTTTTGAAGCCGCGGCGTTCTGGCGGAAAATAA_-_ATGGGGAACTGCTGCGGATCTGGCGGAGGATCCAAGACTGTACGAAAGGAACGCAGGCCGAATCCGTTCTCGCAGGACTTTAACCCTGCCGGAGCACCCCGGGTTTCGGTTTTGAAAGGAGCGGCCGTTGGACGCAACATACATGATAAGTATGTGCTGGGAAGAGAGCTCGGCAGGGGTGAGTTCGGCATTACTTACCTTTGTACTGACAAGGAGACTGAAGAAATGCTTGCCTGCAAGTCTATTTCCAAGCGGAAGCTCAGAACTGCGATAGATATCGAGGATGTGAGGCGAGAAGTAGCTATAATGAACAATTTGCCTCAGCATCCGAACATTGTTACCTTGAAAGCTACGTACGAGGACGACCACGCTGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGAGAGCTATTTGACAGGATCGTTGCTAGAGGGCATTACAGCGAGCGTGCCGCGGCTGCTGTTACACGTACTATTGTTGAAGTTGTTCAGATGTGTCACAAAAACGGGGTGATGCATCGGGACCTCAAACCTGAGAATTTTCTGTTTGCGAATAAAAAAGAGAATTCAGCTTTGAAGGCTATTGATTTCGGTCTTTCTGTGTTCTTTAAGCCAGGCGAGCGATTTTCTGAAATAGTGGGTAGTCCATATTACATGGCACCAGAAGTCCTGAAGCGGAACTATGGACCAGAGGTTGATGTGTGGAGTGCAGGGGTCATTCTGTACATTTTATTGTGTGGAGTGCCACCATTCTGGGCTGAAACGGAGCAGGGGGTTGCGCAGGCCATTCTTCGGGGTCAGATAGATTTCAAAAGAGATCCATGGCCAAAAGTTTCTGAGCATGCCAAGGGTCTTGTCCGGCAGATGCTTGAGCCTGATCCTAAGATTCGGTTAACTGCTCAACAAGTGCTTGATCATCATTGGTTACAAAATGCCAAAAAGGCATCAAATGTTCCTCTGGGTGATGTGGTCAGATCAAGAATCAAGCAGTTCTCTATGATTAATAGGTTCAAAAAGAAAGCTTTAAGGGTAATTGCAGAACATTTGTCTGTTGAAGAAGCAGAGAGTATGAAAGAAATGTTCAAGAAGCTGGACATGAAGAACCATGGTACAATATCCTTTGAGGAACTCAAAGTGGGTCTTCAAAAGCTTGGCTCTCAATTATCGGAGCAAGAAGTGCAACTTTTAATGGAATCTGCGGATGTTGACAAGAATGGCATGCTAGATTATGGTGAATTTGTAGCGGTCGCAGTTCATTTGCAGCGAATGGACAATGATGAGCATTTGCACAAGGCATTTAAATTCTTTGACAAAAATGCCAGTGGCTATATTGAAGTTGATGAGCTTAAAGAAGCCTTGATTGATGACATTGCTGAAAATGCTGTAGAGGTGTTGAATGACATTGTCCGGGAAGTGGATACAGACAAGGATGGCCGCATCAGCTATGAAGAGTTTGTCGCAATGATGAAAACTGGTACTGACTGGAGAAAAGCCTCCCGGCATTATTCACGGAACAGGTTCAATAGCCTCAACATGAGATTGGTGAAGGATGGCTCATTGCAGCTGGTTAATGACGATAAAAGATAAATGTAGCTCTAGATGGATTGTATAGTATAAGAGTCCCAAGGAGACTAGTAGTTTCTATGGGCATTACTAATCATGATTTGATCTTAGAATTGTATTTCATTTTGTGCCTCTGCGGTTGTGTTCTTGATATTGTTGTGAGCCTTTTGTGGTGCCAAGGCTTTGCCTAAGTTCTAATGCAAGTTGTGTCTACAACGCACATGATAGCCAGCTGCATGTTTAAAGGGTGTTCATTTATGCATGCCGGGCCAGTCCTTGTGCAGTTGGAAGCTAATAATTCAATATGAAAGTTTGTGATCTGCAAGAACAGATTAATTTGAAGAATGAGGTTGCAGCTTTCTTTTCTTCTACCTGGTTGCCAGCTGGCCTTTAGATTAAGATACAGTTCATTTCCTCTTTGCTCGGGTCTGCTTCTGTTGCTGGAGAATACAAGGCTTGCTAAAGGTGACCAACTCCTGATTTGTTAGCATTTTATCCTTGCGTTCAGATGATTTCAGTTTTTAAAAATATAGTGTGTTTAATCATTACTTAGTATTTGGATGGTCAAACAAGTTTGCTGTCACTTCAGTGATTGCAGCATACTTGGACAGCATGTACTGTTATAATGAACACTTTTCCATGCTGTTTTTAAACATTTTCTCCACGGAAGGTTTCATACAATCTAGACTATGTCGTATGCCCTCTTTTGTTTTATATTCAGTCAGCAAAGGGAGATTAAGTTGAATTTAAAGGTAAGTAGGCTGGTAGTTTTCCATATGTACATGTAGAATTTTTGCGTTGTCTTTCTCATGTAGATAACTGATTCATTTATGACTTTCATTTGTTGACCACCAGAACTTTTTATAAATAGTTTGAGCAATACCTTTCTGGGTACCTAGTTTGAGCAATGCTAGCAACTGGAGCAAGCAATTTTTGTTGAAAGGGAAAATCTTTACTGTTTAGAAAGATTGCATTATATGTATGGGTTGAGATGAAATCATAGCCTGTTATTTTGAAAGAAAAAAG

Fln Alignment:

sp_v1.1_unigene2611___PNPFSQDFNPAGAPRVSVLKGAAVGRNIHDKYVLGRELGRGEFGITYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIVARGHYSERAAAAVTRTIVEVVQMCHKNGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAILRGQIDFKRDPWPKVSEHAKGLVRQMLEPDPKIRLTAQQVLDHHWLQNAKKASNVPLGDVVRSRIKQFSMINRFKKKALRVIAEHLSVEEAESMKEMFKKLDMKNHGTISFEELKVGLQKLGSQLSEQEVQLLMESADVDKNGMLDYGEFVAVAVHLQRMDNDEHLHKAFKFFDKNASGYIEVDELKEALIDDIAENAVEVLNDIVREVDTDKDGRISYEEFVAMMKTGTDWRKASRHYSRNRFNSLNMRLVKDGSLQLVNDDKR
C0PQ38______________PNGRKRDNVGGDVAKIPVLKGC-LEQSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTGTDWRKASRHYSRGRFNNLSIKLVRDGSLQMENNERR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
274	80			20	0.995493
275	80		20		0.995493
276	80		20		0.995493
277			20	80	0.995493
278		80	20		0.995493
295		80		20	0.995493
344	90		10		0.90298
345	90		10		0.90298
481	90		10		0.90298
523	90		10		0.90298
615		14		85	0.993533
620			85	14	0.993533
621		85		14	0.993533
622	85		14		0.993533
623	85		14		0.993533
625	85			14	0.993533
626			14	85	0.993533
627	85			14	0.993533
631		14	85		0.993533
1489	90			10	0.90298
1492	81		18		0.999994
2678	88	11			0.923564
2743		83		16	0.994512
2750		16		83	0.994512
2853		33		66	1.0
2949		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain