SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2610

Length: 2590 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2610
CGTCGTGACCTTGGCTGTCAGTTGATTATGTCCCGTAAAACCCCGAGTCTGCGACACAGTACTCGTAACTCCCAGGGTTTCAAAGCGTGAACCTTGAAGTCGCGGTGTTTTATTTTCATTTGTAGTTCAAAGACCGGCTCATATATGCATTTTCAGGTCTCTTTCGATTCGTATTGACGGCCCAGATTGGTGTTGCAGCTGCCATGGATGGTGTGTATTCTCGGCCCCGTCCGAAGCGACCGTATTTCGAGCAACCGGGTGAAGACATTGGCCGCATGCACAAGCGGGTACAGCATCCCCAACCTCCTTCAGCAGGGCCGGGCGAAACTGTGTTTCGAATTCTCTGCCCGGAGTCCAAGGCTGGAGGAGTCATAGGAAAGGGGGGTAGCATTGTTTCGCAGATTAGGCAGGAGACAGGTGCCCGAGTCACCGTGCAGGAGACTGTCCAGGGTTGTGAAGAGAGGGTTATTGTTATTTCTGCACCAGAAGATGCTGGGAACAATGGTGGAGATTTGGGGAAAGTTTCACGGGCCCAAGAGGCTCTGTTTAGGGTTCATGGAAGGATTTTTGAAGATATTGTCGATGAAAATGACCCCGACAATCTTATTACTACTCGTCTGGTTGTGCCCAACGGTCAAGTAGGGTGTTTGCTGGGCAAGGGTGGGAAGATCATCCAACAAATGAGGGAGGAGACGAAGGCCCATATTAGGATTTTGTCTCGAGAGATGACGCCGCCATGCGTTCAATCTACAGATGAGATTTTACAGATTACAGGGTACTTGAATGTTGTGAAAAAAGCATTACAGATTATCTCAACCCGACTGAGAGACAATCCTCCCAAGGAACGTGCTCAGCCACCTTCACATTCTGCTATTTACTCTCCAAATAATCATTCTACACCTGCAGATGTTTACTTGCCATATCAAAATACAATATCTCGTCATGCAAATTTGGATGAGCCTGTTTCAGGGATGAGATCATCTAATGAATTTAGCAGGGGTTCAGGTCCTGCAAGTTCTGGACATATATTTGCTCCTGCAAAAGGGCCTCCAACTTCTGGACATATGTTTTCTGAAAGTGGAGGGTCTCGTCTGACTGATCGTGGGCCCTCTTCATCTGTGGAAGAGCTAGTTTTTCGTGTTTTATGTCCAAATAAGAAAATTGGCAGTGTAATTGGGAAGGGTGGTAGTATTATTAAACGCATGCGGGAAGACATTGGTGTGAACATCAGAGTTACCGATTCTGTTCCAGGGTCTGATGATCGCATTATTATAATATCGTCAAATCAGGTTCCCAATGACAATCTGTCTCCTGCCCAGGAAGCTTTACTGCACATTCAAAATCAAATTGTGGACCTGGGGCCAGACAAGGATGGTGTTATCACCACAAGGCTTCTCGTCCCAGCTAGTCAAGTTGGTTGTCTAATTGGCAGGGGTGGTACAGTGATTTCTGAAATGAGGCGGACAACAGGTGCGAATATTAGAATATTACCAAGAGAAGACCTTCCTCGGTGTGCTTTGGAAACTGATGAGTTGGTTCAGATTGTAGGTGATATAAGGGTTGCACGAGAAGCTTTAGTTCAGATAACTTCAAGATTGCGGGAAAATTTAAACCATGAAAGGTCCAGTACTGGTGCTATGGTTTCTTCGTCTCTGGCACCATTAAGTAGTAGAGAAAGGTTTGAGCAGGGCTCTCCTGGTAGATCTTTCTCTTCTAGCATGGCATTTCAAGGTGGTGGTCATTCATCATCAAGCTATCCGACTATGCAGTCTTCACCAGCCCCATGGTCATCAAAGTCAAATCGGGATATAGGCAGTATTGGCAATTTCTCTGAGTTTGAGGAGCCAATTCTTCGTCAAGGGGGTTCTGCTGGATTTGGAAGAGCTGCTGGTGGGCTTATCACAAAAACTACAGTTGAAGTTGTAATACCAGAACGTGCAGTTGCAGCCATTCTAGGAAAGTCTGGGAATGGTATTGTTAAAATTCAGCAGATTTCTGGTGCCAAAGTTAATCTTCTTGAAGTTAGACCAGGAACATCTGAAGGAGTGGTTGAAATTTCAGGCACTCCAGAGCAAACAAATGCAGCCCAATGCTTGATTCAAGCATCCATTGTCAACAGCAAACCTTTATTTCGTTAATATGCCAATGAACAGATTTTATGATGAAGCGCAAGAATATTTGTAGTCCGGAACACTATTTTGTATGGACAAGAAAACGGTTCAAGAACTAAACAATTAAAGCTTTTCATTTCTTTATTGTGAAATTCCATGGGATCCTCTTCAACTGAAATTTTTGAGACGTGGAGACTTGAATGAAGTGCTGTAATTGCCAAAAATGTTGCCGGGAAAATTTGACATTGTAGTGACAGACATTGTTTTTCCACTGCCCAGGCAAATGTGTTTATCAGTAATCAATACTTCTTTATCCGGCTTATAAAGTGGGATTTCTTTGACTTGACATAAATGTATTTTGGAAGAAAAGTCACAGAACGATTTTGATAAACAGCAACTGGATTATATTTTGAATTTGGATTCTACTCTTCTGAGTTTTAAGGATTTGAAATTTATATCGGACTCTTTAAGTTTCTGCC

Ace file of the UniGene sp_v1.1_unigene2610

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	KH domain-containing protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	57%

Source	InterPros	Term	Type	Identity
Blast2go	K Homology domain	IPR004087	-	57%
Blast2go	K Homology domain, type 1	IPR004088	-	57%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE96

Fln msg: your sequence is longer than subject: 645 - 348

Fln protein: MDGVYSRPRPKRPYFEQPGEDIGRMHKRVQHPQPPSAGPGETVFRILCPESKAGGVIGKGGSIVSQIRQETGARVTVQETVQGCEERVIVISAPEDAGNNGGDLGKVSRAQEALFRVHGRIFEDIVDENDPDNLITTRLVVPNGQVGCLLGKGGKIIQQMREETKAHIRILSREMTPPCVQSTDEILQITGYLNVVKKALQIISTRLRDNPPKERAQPPSHSAIYSPNNHSTPADVYLPYQNTISRHANLDEPVSGMRSSNEFSRGSGPASSGHIFAPAKGPPTSGHMFSESGGSRLTDRGPSSSVEELVFRVLCPNKKIGSVIGKGGSIIKRMREDIGVNIRVTDSVPGSDDRIIIISSNQVPNDNLSPAQEALLHIQNQIVDLGPDKDGVITTRLLVPASQVGCLIGRGGTVISEMRRTTGANIRILPREDLPRCALETDELVQIVGDIRVAREALVQITSRLRENLNHERSSTGAMVSSSLAPLSSRERFEQGSPGRSFSSSMAFQGGGHSSSSYPTMQSSPAPWSSKSNRDIGSIGNFSEFEEPILRQGGSAGFGRAAGGLITKTTVEVVIPERAVAAILGKSGNGIVKIQQISGAKVNLLEVRPGTSEGVVEISGTPEQTNAAQCLIQASIVNSKPLFR*

Protein Length: 646

Fln nts: CGTCGTGACCTTGGCTGTCAGTTGATTATGTCCCGTAAAACCCCGAGTCTGCGACACAGTACTCGTAACTCCCAGGGTTTCAAAGCGTGAACCTTGAAGTCGCGGTGTTTTATTTTCATTTGTAGTTCAAAGACCGGCTCATATATGCATTTTCAGGTCTCTTTCGATTCGTATTGACGGCCCAGATTGGTGTTGCAGCTGCC_-_ATGGATGGTGTGTATTCTCGGCCCCGTCCGAAGCGACCGTATTTCGAGCAACCGGGTGAAGACATTGGCCGCATGCACAAGCGGGTACAGCATCCCCAACCTCCTTCAGCAGGGCCGGGCGAAACTGTGTTTCGAATTCTCTGCCCGGAGTCCAAGGCTGGAGGAGTCATAGGAAAGGGGGGTAGCATTGTTTCGCAGATTAGGCAGGAGACAGGTGCCCGAGTCACCGTGCAGGAGACTGTCCAGGGTTGTGAAGAGAGGGTTATTGTTATTTCTGCACCAGAAGATGCTGGGAACAATGGTGGAGATTTGGGGAAAGTTTCACGGGCCCAAGAGGCTCTGTTTAGGGTTCATGGAAGGATTTTTGAAGATATTGTCGATGAAAATGACCCCGACAATCTTATTACTACTCGTCTGGTTGTGCCCAACGGTCAAGTAGGGTGTTTGCTGGGCAAGGGTGGGAAGATCATCCAACAAATGAGGGAGGAGACGAAGGCCCATATTAGGATTTTGTCTCGAGAGATGACGCCGCCATGCGTTCAATCTACAGATGAGATTTTACAGATTACAGGGTACTTGAATGTTGTGAAAAAAGCATTACAGATTATCTCAACCCGACTGAGAGACAATCCTCCCAAGGAACGTGCTCAGCCACCTTCACATTCTGCTATTTACTCTCCAAATAATCATTCTACACCTGCAGATGTTTACTTGCCATATCAAAATACAATATCTCGTCATGCAAATTTGGATGAGCCTGTTTCAGGGATGAGATCATCTAATGAATTTAGCAGGGGTTCAGGTCCTGCAAGTTCTGGACATATATTTGCTCCTGCAAAAGGGCCTCCAACTTCTGGACATATGTTTTCTGAAAGTGGAGGGTCTCGTCTGACTGATCGTGGGCCCTCTTCATCTGTGGAAGAGCTAGTTTTTCGTGTTTTATGTCCAAATAAGAAAATTGGCAGTGTAATTGGGAAGGGTGGTAGTATTATTAAACGCATGCGGGAAGACATTGGTGTGAACATCAGAGTTACCGATTCTGTTCCAGGGTCTGATGATCGCATTATTATAATATCGTCAAATCAGGTTCCCAATGACAATCTGTCTCCTGCCCAGGAAGCTTTACTGCACATTCAAAATCAAATTGTGGACCTGGGGCCAGACAAGGATGGTGTTATCACCACAAGGCTTCTCGTCCCAGCTAGTCAAGTTGGTTGTCTAATTGGCAGGGGTGGTACAGTGATTTCTGAAATGAGGCGGACAACAGGTGCGAATATTAGAATATTACCAAGAGAAGACCTTCCTCGGTGTGCTTTGGAAACTGATGAGTTGGTTCAGATTGTAGGTGATATAAGGGTTGCACGAGAAGCTTTAGTTCAGATAACTTCAAGATTGCGGGAAAATTTAAACCATGAAAGGTCCAGTACTGGTGCTATGGTTTCTTCGTCTCTGGCACCATTAAGTAGTAGAGAAAGGTTTGAGCAGGGCTCTCCTGGTAGATCTTTCTCTTCTAGCATGGCATTTCAAGGTGGTGGTCATTCATCATCAAGCTATCCGACTATGCAGTCTTCACCAGCCCCATGGTCATCAAAGTCAAATCGGGATATAGGCAGTATTGGCAATTTCTCTGAGTTTGAGGAGCCAATTCTTCGTCAAGGGGGTTCTGCTGGATTTGGAAGAGCTGCTGGTGGGCTTATCACAAAAACTACAGTTGAAGTTGTAATACCAGAACGTGCAGTTGCAGCCATTCTAGGAAAGTCTGGGAATGGTATTGTTAAAATTCAGCAGATTTCTGGTGCCAAAGTTAATCTTCTTGAAGTTAGACCAGGAACATCTGAAGGAGTGGTTGAAATTTCAGGCACTCCAGAGCAAACAAATGCAGCCCAATGCTTGATTCAAGCATCCATTGTCAACAGCAAACCTTTATTTCGTTAA___TATGCCAATGAACAGATTTTATGATGAAGCGCAAGAATATTTGTAGTCCGGAACACTATTTTGTATGGACAAGAAAACGGTTCAAGAACTAAACAATTAAAGCTTTTCATTTCTTTATTGTGAAATTCCATGGGATCCTCTTCAACTGAAATTTTTGAGACGTGGAGACTTGAATGAAGTGCTGTAATTGCCAAAAATGTTGCCGGGAAAATTTGACATTGTAGTGACAGACATTGTTTTTCCACTGCCCAGGCAAATGTGTTTATCAGTAATCAATACTTCTTTATCCGGCTTATAAAGTGGGATTTCTTTGACTTGACATAAATGTATTTTGGAAGAAAAGTCACAGAACGATTTTGATAAACAGCAACTGGATTATATTTTGAATTTGGATTCTACTCTTCTGAGTTTTAAGGATTTGAAATTTATATCGGACTCTTTAAGTTTCTGCC

Fln Alignment:

sp_v1.1_unigene2610___PSAGPGETVFRILCPEXXXXXXXXXXXXXXSQIRQETGARVTVQETVQGCEERVIVISAPEDAGNNGGDLGKVSRAQEALFRVHGRIFEDIVDEN-DPDNLITTRLVVPNGQVGCLLGKGGKIIQQMREETKAHIRILSREMTPPCVQSTDEILQITGYLNVVKKALQIISTRLR--------------------DNPPKERAQPPSHSAIYSP
D5AE96______________PSFSGEELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDERIIIISANEVLEDN------LSPAQEALLHIQSQI----VDLGPDKDGVITTKLLIPSNQTGCLLGKGGAIISEMRKQTRANIRILPREDLPPCALDSDEMVQIVGDIRAARAALVQVTSRLRSFIHREIGISGPFLSSSSAPDPSSKRRLEPSSPGRSYSP

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
137		11	88		0.923564
138			88	11	0.923564
141		88	11		0.923564
143		11		88	0.923564
144	90	10			0.90298
146	90			10	0.90298
147			10	90	0.90298
150	90		10		0.90298
152	10			90	0.90298
153		10		90	0.90298
167			60	40	1.0
294	15		84		0.999986
383		12	87		0.992554
469	85		14		0.993533
470		14		85	0.993533
471	14			85	0.993533
474			14	85	0.993533
477			14	85	0.993533
478	14			85	0.993533
480	14			85	0.993533
483	85		14		0.993533
487		14	85		0.993533
488	85			14	0.993533
615		14		85	0.993533
663		12		87	0.992554
808			85	14	0.993533
829	87	12			0.992554
832		87		12	0.992554
1151			12	87	0.992554
1152		87	12		0.992554
1313			14	85	0.993533
1334	16		83		0.994512
1384		12		87	0.992554
1662	14	85			0.999981
2575	62		37		1.0
2580		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain