SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2601

Length: 1717 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2601

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, putative	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	transferase family expressed	-	-	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	0.0	51%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNE0

Fln msg: your sequence is longer than subject: 503 - 433

Fln protein: MGIQPWVSSVSEHCGYFPILDPAQRKQASARKSKKMGEEVPARTSKKMGKENVQIHSKLTVVPSKAVAPGKFYPLSILDHMMQLHNVRLVYYYRKALTMATSTDVVMDLKVSLSRVLSNYAAACGRLQRRNDGNWEIRCSDAGVRVLEAKVDMTLEKWFEIADRDSELKLCYWESLGPDPYISSLLYVQFTEFEGGGLAIGLSCGHMLADPSCATLIMKAWGEIHRRAQVLHPPFFHPPGLKARPNKCEVTTATKYYESTFKRELATSCDQGDAGYKTSIFKFSDEMVQQCVSEVQGGDHKYEPVTPFQALSALFWIACTKAKGITGAEESKLLVCSEFRKIIIAPLPHGFFGNALHFSEVSSTAGDLVGNDLSYPAKLIHEDIFRLDKDELRSVVDWLDNQKNSDGQLPPPFYLYGPNLTAVNGEEFFTYDAVFENDLKPLHVSYYVEPVHGEGLIMVLPSAEGGSSRTVMVTLPATQASQLSIDPAILRFNPTIWMNNVA*

Protein Length: 504

Fln nts: CGTCGTGACCATGGGGA_-_ATGGGGATCCAACCGTGGGTATCCTCTGTTTCAGAGCACTGTGGATATTTCCCTATACTAGACCCTGCACAGAGGAAGCAAGCGTCTGCAAGAAAATCGAAGAAGATGGGTGAGGAAGTGCCTGCAAGAACATCCAAAAAGATGGGTAAGGAGAACGTTCAGATTCACTCCAAGCTGACGGTGGTTCCCAGCAAGGCGGTTGCACCAGGCAAATTTTATCCACTCTCTATTCTCGATCACATGATGCAGCTCCATAACGTTCGCCTTGTCTATTACTACCGAAAAGCTCTCACTATGGCGACATCCACAGATGTTGTCATGGACCTGAAGGTCTCTCTTTCCCGAGTTCTTTCAAACTATGCGGCGGCTTGCGGAAGGTTGCAGCGCCGGAACGATGGCAATTGGGAAATCAGATGTAGTGATGCAGGCGTCCGGGTTTTGGAGGCCAAAGTTGACATGACTCTTGAAAAATGGTTTGAAATTGCAGATAGAGACTCTGAGCTCAAGCTTTGCTACTGGGAAAGTCTGGGTCCAGATCCTTATATCTCTTCTCTTTTATATGTTCAGTTCACTGAATTTGAAGGAGGTGGACTGGCCATTGGGTTGAGCTGTGGTCACATGCTAGCCGATCCCAGCTGTGCAACTCTGATCATGAAAGCCTGGGGAGAAATCCATCGTCGGGCACAGGTTCTGCATCCGCCCTTCTTCCATCCACCAGGCTTGAAGGCAAGGCCAAATAAATGCGAGGTAACGACTGCAACCAAGTATTACGAATCTACCTTCAAGAGGGAGCTGGCTACTAGTTGTGATCAAGGGGATGCAGGATACAAAACAAGTATTTTCAAATTCAGTGATGAGATGGTGCAGCAATGCGTTTCCGAGGTTCAGGGAGGAGATCACAAGTATGAGCCGGTGACTCCATTTCAGGCTCTGTCTGCTCTGTTCTGGATTGCTTGCACCAAAGCCAAAGGAATAACTGGTGCAGAAGAATCGAAACTGTTAGTGTGTTCAGAGTTTCGGAAGATAATTATAGCTCCTCTGCCTCATGGCTTTTTTGGAAATGCATTGCATTTCTCAGAGGTTTCTAGCACTGCAGGAGACCTTGTGGGTAATGACTTGTCTTACCCTGCAAAGCTTATACATGAAGATATATTTCGGCTGGACAAGGATGAATTGAGATCAGTGGTGGATTGGCTGGACAATCAGAAGAACAGTGACGGGCAACTGCCACCTCCGTTCTACCTCTATGGTCCCAATCTCACAGCCGTTAATGGCGAGGAGTTCTTCACTTATGATGCTGTTTTTGAAAATGACCTAAAACCCCTTCATGTTTCGTACTATGTGGAGCCGGTGCATGGGGAGGGCCTTATTATGGTGCTCCCTTCTGCAGAGGGTGGCTCCAGTAGAACTGTCATGGTAACCCTCCCTGCTACCCAGGCGAGCCAACTTTCCATCGATCCTGCCATTCTGCGATTCAATCCTACCATTTGGATGAATAATGTAGCGTAG___GAGATGTGCTTATGAATAATCCATGCAAATCAACAAAAGATCTTGCATTAAAGCTGCTGTTCTTGTGAATTTTATTAACTGTTCCTTAGTCTGGAGCCGAGACTGAAATGGCTTCTCCATTGGAGTTAGTACAACGATTCTAATGAAATTTCTGTCGTCTTTGATTTGAATTGATGAGCAGTTATAAATTT

Fln Alignment:

sp_v1.1_unigene2601___LTVVPSKAVAPGKFYPL-----SILDHMMQLHNVRLVYYYRKALTMATSTDVVMDLKVSLSRVLSNYAAACGRLQRRNDGNWEIRCSDAGVRVLEAKVDMTLEKWFEIADRDSELKLCYWESLGPDPYISSLLYVQFTEFEGGGLAIGLSCGHMLADPSCATLIMKAWGEIHRRAQVLHPPFFHPPGLKARPNKCEVTTATKYYESTFKRELATSCDQGDAGYKTSIFKFSDEMVQQCVSEVQGGDHKYEPVTPFQALSALFWIACTKAKGITGAEESKLLVCSEFRKIIIAPLPHGFFGNALHFSEVSSTAGDLVGNDLSYPAKLIHEDIFRLDKDELRSVVDWLDNQKNSDGQLPPPFYLYGPNLTAVNGEEFFTYDAVF----ENDLKPLHVSYYVEPVHGEGLIMVLPSAEGGSSRTVMVTL
B8LNE0______________ITVKSSQMVRPAAPTPQRDLWNSNVDLVVPRIHTASVYFYRPSGSPDFFSMHI--LRDALSKVLVPFYPMAGRLKRDPDGRIEINCNGEGVLLVEATTDSVIDDFGDFAPTMELKQLIPKVNYSEDISSYALLVLQVTFFKCGGVSLGVGMQHHVADGYAGLHFINTWSDVARGLDIALPPFIDRTLLRARNPPTPKFQHIEYQQPPPLKDTSGIMNGEKNDFSVAIFKLTKEQLDILKGKARENGNKVS-YSSYEMLSGHIWRCACKARNLTEDQGTKLYIATDGRSRLRPSLPPGYFGNVIFTTTPMAVAGDIVSKPTYYAASVIHEALGRMDDEYLRSALDYLELQPDLTALVRGAHTFRCPNIGITSWSRLPIHDADFGWGRPIFMGPGGIAY-------EGLAFILPSSAKDGSLSVALGL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
249			20	80	0.995493
250		80	20		0.995493
252	20	60	20		0.99255
306		16		83	0.994512
375		85		14	0.993533
376		14		85	0.993533
386		71		28	1.0
406		85		14	0.993533
435		14		85	0.993533
446	14		85		0.993533
549		12		87	0.992554
552	87	12			0.992554
586		12		87	0.992554
630		11		88	0.923564
688	88		11		0.923564
1157			11	88	0.999952
1160	88		11		0.999952
1164	88	11			0.999952
1467	10			90	0.999898
1469		90	10		0.999898
1470		90	10		0.999898
1471	85		15		1.0
1473		36	63		1.0
1524		68	31		1.0
1535	68		31		1.0
1580	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain