SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2597

Length: 889 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2597 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein; K03026 DNA-directed RNA polymerase III subunit C4 [EC:2.7.7.6]	-	-	3.0e-38	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%
Blast2go	dna binding	-	-	1.41475e-41	61%

Source	ECs	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase.	EC:2.7.7.6	-	3.0e-38	42%

Source	KEGGs	Term	e value	Identity
AutoFact	Purine metabolism	00230	3.0e-38	42%
AutoFact	Pyrimidine metabolism	00240	3.0e-38	42%
AutoFact	Metabolic pathways	01100	3.0e-38	42%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA polymerase III Rpc4	IPR007811	-	1.41475e-41	61%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
530	77		22		0.999999
551	44		55		1.0
643	20			80	0.995493
698		83	16		0.994512
699	16			83	0.994512
700			16	83	0.994512
703			16	83	0.994512
707			25	75	0.996473
710	75	25			0.996473
714	50		25	25	0.995533
715			33	66	0.997452
722		33		66	0.997452
723			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain