SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2595

Length: 1994 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2595
CTCAGTTGGAAATGAAAAAGAATGCCGCAGCTATTTTAGCAGATTTAACCATGAAGCATGGGGCATCTTTTCTTCTTTATGAAGATGAAACCCCAATTGAACCTCAAAAGATAGTGGAAGTTGTTATGGGGAATCTAATAGCCATTTTACATACTGCAGAAAATGCAGTGAAGGTCCTGTTACATTTGACAGAAATTTCAGACACCAATGAAGTAATCGAATTGATCAAGGACAATGATCATGGCATTCAAACATTTTTGGGTTATATCAAAATTGGAAAGCCACCACTGCGGGATCATACAATAGAATTGGTATTCAACTTGTGCCAAAAGGATGTAACTGTGATATCTTTTGTAATGAACGATCATGACTGTTTGAAAGCACTTCTGCAGGTAATAAAAAATGGTTTAGTTGAGGGCAATGTTCAAGCATTTGCAGCAGGAATTCTTTCAAAGATTCCATTTTCTGATGATAACCTGAACAGGCTTATGACCACTGAAAATGTGCTTCCGGCATTGGTAAAGATGGTTTCTGGGAAAAATCTTGAAGGCCAAGCGAATGCTCTGGGGACTTTAGTGAGGTTTACTGATTCGAGTGATGTCCAATCTCAGCGGTCCTTGATTGAATTAGATCTGGTTTTATCTCTTAGACAAGCGTTAAAGGATGGAACTGTACCAGCAAAAATTTGGGCATGCAGGATCTTGGAAAATATTTCTAGGAGCACCACAAAGCTAAACAGAGAACCTAACAAGTGGGCTTTCAAGCTTTCCAGGAAAACTTCTCTAAACTGCAAACTTCACAAAGGGAAATGTAGTTTAAAGGACTGCATTGTTGAGGCTGGGGTTGTTCCTGATATTGTGGAGATCCTGAAGAACCAAAACCCGGAAGTTGTTTTAGCTGGATTAAAAGCTTTGGAGACATTATTGTTAGAGGAAAACATGTTAGAGGATGGTATACAGATATTGTATAAATGTAAAGCCATTGATCAATTGTTTCCATTGGTACACTTGGATTCTCATACTTGCTCTGAAAAGTGTGTGGATCTACTGGAAGTGATTCTTAGGTTCCCACACATGAAAGGTGCCTATGGGCAGCTGGTTCAGAGGTCTTTGGCTGCTGTTTCTGCTTGCAGGGTACCGTCACTACAACAGAAAGCTCGTAAGCTGCTTAGACAATTGACGATCCCATCATAATCTGAAACATGCACCATAAGATGGAGAATTTTGTTCAGTGGACATATTCTTGAACTATAGTTTCAAATTCTATTTCATCTTCCAATAGAATCCTACTGAATTTGTGAGATGCAGGTTGAAGTATGCTGGAGTGTTTACTTAGTCTCCAAACAACCGTCTCAGAAAATGAAGATCACAATATTTTTTGTTCTGGAGGCTCTTGAACTATTTAAATCTTCCAGTTTTAAATGAAAGAATACTTTGACGGAAAAGTCACTTATTCTGAATCATATAAGACAACGTTGTGTCTTCCGTTGAGGTCAATTTTAGAGTCATATTCAAGATGATGGGAACAGTTAGAAGCAAATTCATATGGTTGAACGGGTAGAGTAAATATATTTGTACATAGAGATATATGTTACTGTCTTGCCCAAGTTCAGATCCATTATAGAGGCTTTTCAAGGGAGAGTGTGAACTAAAAGCATTTCCAGACCTTTTAGCTCGTGAATCTGAGAAATCTTATAGCAGGTTGAATATGATATGTTATTTGTGGAGGCAAGTTCCTGCTACCTTTATTGTACAATTATTCTGTAATCTTGGGTTTTGTTGCCTTGAATGGTATATTATAGCATATATGCATGCTACAATATTTGTGTTCGATATATTTTCTGTAATTTCAAAAGAAGTTCACACTTCACATCGAAAGAAGATCATAGCTGGCAACTCAGTTGTGTCCTGTGATGTGTTTTGCGACAAGTCGGTAGTTAGGACCACCCTCTGTATTTTGGTTTAAAGTAAATATACGACTTTATAGCATTTCAG

Ace file of the UniGene sp_v1.1_unigene2595 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=U-box domain-containing protein 44; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	24%
Blast2go	protein	-	-	2.76965e-17	45%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	2.76965e-17	45%
Blast2go	Armadillo-type fold	IPR016024	-	2.76965e-17	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LM76

Fln msg: your sequence is shorter than subject: 397 - 801

Fln protein: QLEMKKNAAAILADLTMKHGASFLLYEDETPIEPQKIVEVVMGNLIAILHTAENAVKVLLHLTEISDTNEVIELIKDNDHGIQTFLGYIKIGKPPLRDHTIELVFNLCQKDVTVISFVMNDHDCLKALLQVIKNGLVEGNVQAFAAGILSKIPFSDDNLNRLMTTENVLPALVKMVSGKNLEGQANALGTLVRFTDSSDVQSQRSLIELDLVLSLRQALKDGTVPAKIWACRILENISRSTTKLNREPNKWAFKLSRKTSLNCKLHKGKCSLKDCIVEAGVVPDIVEILKNQNPEVVLAGLKALETLLLEENMLEDGIQILYKCKAIDQLFPLVHLDSHTCSEKCVDLLEVILRFPHMKGAYGQLVQRSLAAVSACRVPSLQQKARKLLRQLTIPS*

Protein Length: 398

Fln nts: CTCAGTTGGAAATGAAAAAGAATGCCGCAGCTATTTTAGCAGATTTAACCATGAAGCATGGGGCATCTTTTCTTCTTTATGAAGATGAAACCCCAATTGAACCTCAAAAGATAGTGGAAGTTGTTATGGGGAATCTAATAGCCATTTTACATACTGCAGAAAATGCAGTGAAGGTCCTGTTACATTTGACAGAAATTTCAGACACCAATGAAGTAATCGAATTGATCAAGGACAATGATCATGGCATTCAAACATTTTTGGGTTATATCAAAATTGGAAAGCCACCACTGCGGGATCATACAATAGAATTGGTATTCAACTTGTGCCAAAAGGATGTAACTGTGATATCTTTTGTAATGAACGATCATGACTGTTTGAAAGCACTTCTGCAGGTAATAAAAAATGGTTTAGTTGAGGGCAATGTTCAAGCATTTGCAGCAGGAATTCTTTCAAAGATTCCATTTTCTGATGATAACCTGAACAGGCTTATGACCACTGAAAATGTGCTTCCGGCATTGGTAAAGATGGTTTCTGGGAAAAATCTTGAAGGCCAAGCGAATGCTCTGGGGACTTTAGTGAGGTTTACTGATTCGAGTGATGTCCAATCTCAGCGGTCCTTGATTGAATTAGATCTGGTTTTATCTCTTAGACAAGCGTTAAAGGATGGAACTGTACCAGCAAAAATTTGGGCATGCAGGATCTTGGAAAATATTTCTAGGAGCACCACAAAGCTAAACAGAGAACCTAACAAGTGGGCTTTCAAGCTTTCCAGGAAAACTTCTCTAAACTGCAAACTTCACAAAGGGAAATGTAGTTTAAAGGACTGCATTGTTGAGGCTGGGGTTGTTCCTGATATTGTGGAGATCCTGAAGAACCAAAACCCGGAAGTTGTTTTAGCTGGATTAAAAGCTTTGGAGACATTATTGTTAGAGGAAAACATGTTAGAGGATGGTATACAGATATTGTATAAATGTAAAGCCATTGATCAATTGTTTCCATTGGTACACTTGGATTCTCATACTTGCTCTGAAAAGTGTGTGGATCTACTGGAAGTGATTCTTAGGTTCCCACACATGAAAGGTGCCTATGGGCAGCTGGTTCAGAGGTCTTTGGCTGCTGTTTCTGCTTGCAGGGTACCGTCACTACAACAGAAAGCTCGTAAGCTGCTTAGACAATTGACGATCCCATCATAA___TCTGAAACATGCACCATAAGATGGAGAATTTTGTTCAGTGGACATATTCTTGAACTATAGTTTCAAATTCTATTTCATCTTCCAATAGAATCCTACTGAATTTGTGAGATGCAGGTTGAAGTATGCTGGAGTGTTTACTTAGTCTCCAAACAACCGTCTCAGAAAATGAAGATCACAATATTTTTTGTTCTGGAGGCTCTTGAACTATTTAAATCTTCCAGTTTTAAATGAAAGAATACTTTGACGGAAAAGTCACTTATTCTGAATCATATAAGACAACGTTGTGTCTTCCGTTGAGGTCAATTTTAGAGTCATATTCAAGATGATGGGAACAGTTAGAAGCAAATTCATATGGTTGAACGGGTAGAGTAAATATATTTGTACATAGAGATATATGTTACTGTCTTGCCCAAGTTCAGATCCATTATAGAGGCTTTTCAAGGGAGAGTGTGAACTAAAAGCATTTCCAGACCTTTTAGCTCGTGAATCTGAGAAATCTTATAGCAGGTTGAATATGATATGTTATTTGTGGAGGCAAGTTCCTGCTACCTTTATTGTACAATTATTCTGTAATCTTGGGTTTTGTTGCCTTGAATGGTATATTATAGCATATATGCATGCTACAATATTTGTGTTCGATATATTTTCTGTAATTTCAAAAGAAGTTCACACTTCACATCGAAAGAAGATCATAGCTGGCAACTCAGTTGTGTCCTGTGATGTGTTTTGCGACAAGTCGGTAGTTAGGACCACCCTCTGTATTTTGGTTTAAAGTAAATATACGACTTTATAGCATTTCAG

Fln Alignment:

sp_v1.1_unigene2595___FLLYEDETPIEPQKIVEVVMGNLIAILH-------TAENAVKVLLHLTEISDTN----------------------EVIELIKDNDHGIQTFLGYIKIGK-PPLRDHTIELVFNLCQ-KDVTVISFVMNDHDCLKALLQVIKNGLVEGNVQAFAAGILSKIPFSDDNLNRLMTTENVLPALVKMVSGKN-------------LEGQANALGTLVRFTDSSDVQSQRSLIELDLV-LSLRQALKDGTVPAKIWACRILENISRSTTKLNREPNK-------WAFKLSRKTSLN---CKLHKGKCSLKD--CIVEAGVVPDIVEILKNQNPEVVXXXXXXXXXXXXXXXXXEDGIQILYKCKAIDQLFPLVHLD-SHTCSEKCVDLLEVILRFPHMKGAYGQLVQRSLAAVSA
Q9LM76______________FYVGPNNLPIRLKEVSATILANIVNIGYDFDKATLVSENRVENLLHL--ISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSG-AIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARIT-FVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVNGLCKIHQGICSLRETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHILNVLRENRTERLTRRAVWMVERILRIEDIAREVAEEQSLSAALVDA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain