SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2530

Length: 3522 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene2530
ATGGGGAGGAGCTGCTATGGAAAAAGCAACCATATAAAACTATTGCCATTCGCGCAGGAACAGGACGACGAGATCATGGAGGCCAAGGCGGGACTTGTTGCTGGTTCCTATAAGCGGAACGAGCTTATGGTAGTCCCTGGACACGATGGGCCCAAGCCCATCAGGCTATCCACCCTTCAGGATTGCCAAGTCTGCGGAGATAAAATCGGTCGCAACCCCAATGGGGAACTATTCGTGGCCTGTAACGAGTGTGGATTCCCTGTGTGTCGTCCCTGTTATGAGTACGAGAGAAAGGATGGGAACCGGTGCTGCCCTCAGTGCAAGACTCGGTACAGGCGTCACAAAGGGAGTCCCCGGGTTGAAGGCGATGATGAAGAAGATGGCATGGACGACTTAGAACAAGAATTCAACCTGGAAAGAGATCGCCAAAGCGTAGTCAGTCACAGAGGAAACGCCTTCGACTCTACTCCTCGGGCTGCCCACAGTATCGCTAACCGCTCGATAAATGGAGATCATTATGCACTTTCCCTTCCTCCGATCATGGATGGCGACAGTTTAAGTGTTCAGCGTTTTCCACATGCAGCTACTGTAATTGGAAATGGATTAGATCCAGCCAAGGAGAACTATGGGAGTGCTGCATGGAAGGAGAGAGTGGAGAGTTGGAAAGCGAAGCACGATAAGAAAAGTGGCAGCATCAAGGATGGCATATATGATCCAGACGAGGCCGATGATATAATGATGACTGAAGCCGAAGCGAGACAGCCTCTTTCGCGTAAGGTGCCAACCCCCTCCAGTAGAATCAATCCCTACAGAATTGTTATTGTGATGCGTTTGATAATTCTGGGATTCTTCTTCCGCTACCGATTGATGAATCCTGCCAAGGACGCACTTGGCCTCTGGTTGACCTCCATTATCTGCGAGATCTGGTTCGCCTTCTCCTGGATTCTTGATCAGTTCCCCAAGTGGTTTCCCATCACTAGAGAAACTTATCTCGACAGATTATCCATGAGATATGAGAGGGAAGGAGAGCCTTGCAAGCTAGCACCGGTTGATTTCTTTGTGAGTACAGTGGATCCACTGAAAGAGCCTCCTCTGATTACAGCTAATACTGTTCTCTCTATCCTGGCCGCGGACTACCCTGTGGACAGGGTATCGTGCTATGTATCGGACGATGGAGCATCGATGCTCACATTCGATTCAATGACAGAAACCTCAGAGTTTGCTCGGAAATGGGTTCCTTTCTGCAAAAAGTACAGTATAGAGCCTCGGGCCCCCGATTTTTACTTTTCTCAAAAAATCGATTACCTGAAAGACAAGGTGCAACCGACCTTTGTAAAAGAGCGGCGTGCCATGAAACGAGAGTATGAAGAGTTCAAAGTGAGGATAAACGCCCTGGTTTCAAAGGCTCAGAAGACCCCTGATGAGGGGTGGGTCATGCAGGACGGAACGCCCTGGCCCGGGAACAATACTCGCGATCACCCTGGGATGATTCAGGTGTTTCTGGGAAGCAGTGGAGCCCATGATATTGAGGGGAACGAGCTTCCTCGCCTTGTCTATGTTTCTCGTGAGAAGAGACCTGGATATCAGCACCACAAGAAAGCCGGTGCCATGAACGCCCTGGTTCGAGTCTCTGCAGTTCTAACAAATGCCCCATTCATTTTGAACCTGGATTGTGATCACTATCTCAACAACTGTAAGGCCGTGCGGGAGGCAATGTGTTTTCTCATGGATCCCCAACTTGGAAAGAAACTGTGCTATGTTCAGTTCCCTCAGAGATTCGATGGTATTGATCGCCATGATCGATATGCAAACAGAAACACTGTTTTCTTCGATATCAACATGAAGGGTCTAGATGGCATCCAGGGGCCAGTGTATGTGGGGACTGGATGCGTTTTCAACAGGCAAGCTCTGTATGGGTATGATCCTCCAGTTTCGCAGAAGAAACCTAAGATGACCTGCGATTGCTGGCCATCATGGTGTTGCTGTTGCTGCGGTTCTCGCAAAAAAACAAAGAAATCATCCAAAAAGTTCTTTGGTAGGAAGAAATCTTCCAAGCCCACTGAAATAACCGCTCCCATCTTCAGCCTCGAAGAGATTGAAGAAGGACTTGAAGGTTACGAAGAACATGAGAAATCATGGTTAATGTCGCAGAAGAGCTTTGAAAAAAGATTTGGCCAGTCTCCTGTCTTTATTACATCCACGCTTATGGAAAATGGGTGGTGTTCCAGAGTCTGTAAACTCACCTGCTCTGATAAAGGAAGCCATTCACGTCATAAGTTGCGGATACGAGGAGAAAACTGAATGGGGAAAGGAGATCGGATGGATATATGGTTCAGTGACAGAGGATATCCTGACAGGCTTCAAAATGCACTGCCGTGGTTGGCGATCGGTATACTGCATGCCTCCCAGGCCGGCATTCAAAGGATCAGCTCCTATTAATCTATCAGATCGTTTGCACCAGGTTCTTCGTTGGGCCTTGGGTTCCATAGAAATTTTCCTCAGTAGGCATTGTCCTCTCTGGTATGCCTATGGAGGTAATCTAAAATGGCTTGAAAGATTGGCCTATATCAACACAATCGTGTACCCATTCACCTCAATCCCTCTCGTCGCTTACTGCACGCTCCCCGCCATATGTCTTCTCACAGGAAAATTCATCACTCCAACGCTTACAAGCCTTGCTAGCGTCTGGTTCATGGGACTTTTCTTATCCATCATAGCTACTGGAGTTCTAGAGCTGAGATGGAGCGGAGTGAGCATCGAAGAGTTCTGGAGAAACGAACAGTTCTGGGTCATTGGAGGGGTCTCTGCTCATCTTTTTGCTGTTTTTCAAGGCCTGCTCAAGGTGTTGGGAGGTGTGGACACCAATTTCACAGTCACAGCCAAGGGTAGCGATGAAGAAGACCAATTCGGGGAGTTATACATGTTCAAATGGACGACCCTGCTCATTCCTCCCACTACCTTGCTCATAATAAATCTGGTGAGCTTGGTAGCAGGTGTTTCTGCCGCAGTAAATAATAACTACCAGTCATGGGGACCCCTCTTTGGAAAGCTATTCTTCGCCTGCTGGGTGATATTGCATCTGTATCCCTTCCTCAAGGGTCTTCTGGGAAGGCAGAACAGAACGCCCACTATAGTGATATTGTGGTCTATTCTGCTGGCCTCCATTTTCTCTCTTGTGTGGGTGAGGATCGACCCATTCCTGCCCAAGGTCGAAGGCCCCATTCTTCAGCAATGTGGTGTTGACTGCTAGCTACCTCTTCTCTTCTGATCATTTATGAATTCTATTCATTGGTATTGAGGTTTATTCTATTCATTTGTATTGAGGTTTTGTGATGGACTGAAGGATAAAACTGAAAGCATTCTGTTAGATAGTTTATGAATGCTGTTCATTCGGATGCAAATATACTGCAATGAACCGAAGGATAAAGCACAAGGATTGGACTGGTACTGTAAGAATGTAATTATGCAATCTTTAAAAAATCGGATATAATGAGAAATTGGCGCTGTGTTCATGTTTAAAAC

Ace file of the UniGene sp_v1.1_unigene2530

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase catalytic subunit n=1 Tax=Pinus taeda RepID=Q5DI94_PINTA	-	-	89%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	cellulose synthase	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	74%
Blast2go	Cellulose synthase	IPR005150	-	74%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5DI94

Fln msg: Overlapping hits, possible frame ERROR between 2217 and 2216,

Fln protein: MGRSCYGKSNHIKLLPFAQEQDDEIMEAKAGLVAGSYKRNELMVVPGHDGPKPIRLSTLQDCQVCGDKIGRNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKGSPRVEGDDEEDGMDDLEQEFNLERDRQSVVSHRGNAFDSTPRAAHSIANRSINGDHYALSLPPIMDGDSLSVQRFPHAATVIGNGLDPAKENYGSAAWKERVESWKAKHDKKSGSIKDGIYDPDEADDIMMTEAEARQPLSRKVPTPSSRINPYRIVIVMRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFAFSWILDQFPKWFPITRETYLDRLSMRYEREGEPCKLAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNCKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSQKKPKMTCDCWPSWCCCCCGSRKKTKKSSKKFFGRKKSSKPTEITAPIFSLEEIEEGLEGYEEHEKSWLMSQKSFEKRFGQSPVFITSTLMENxxGVPESVNSPALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC*

Protein Length: 1085

Fln nts: _-_ATGGGGAGGAGCTGCTATGGAAAAAGCAACCATATAAAACTATTGCCATTCGCGCAGGAACAGGACGACGAGATCATGGAGGCCAAGGCGGGACTTGTTGCTGGTTCCTATAAGCGGAACGAGCTTATGGTAGTCCCTGGACACGATGGGCCCAAGCCCATCAGGCTATCCACCCTTCAGGATTGCCAAGTCTGCGGAGATAAAATCGGTCGCAACCCCAATGGGGAACTATTCGTGGCCTGTAACGAGTGTGGATTCCCTGTGTGTCGTCCCTGTTATGAGTACGAGAGAAAGGATGGGAACCGGTGCTGCCCTCAGTGCAAGACTCGGTACAGGCGTCACAAAGGGAGTCCCCGGGTTGAAGGCGATGATGAAGAAGATGGCATGGACGACTTAGAACAAGAATTCAACCTGGAAAGAGATCGCCAAAGCGTAGTCAGTCACAGAGGAAACGCCTTCGACTCTACTCCTCGGGCTGCCCACAGTATCGCTAACCGCTCGATAAATGGAGATCATTATGCACTTTCCCTTCCTCCGATCATGGATGGCGACAGTTTAAGTGTTCAGCGTTTTCCACATGCAGCTACTGTAATTGGAAATGGATTAGATCCAGCCAAGGAGAACTATGGGAGTGCTGCATGGAAGGAGAGAGTGGAGAGTTGGAAAGCGAAGCACGATAAGAAAAGTGGCAGCATCAAGGATGGCATATATGATCCAGACGAGGCCGATGATATAATGATGACTGAAGCCGAAGCGAGACAGCCTCTTTCGCGTAAGGTGCCAACCCCCTCCAGTAGAATCAATCCCTACAGAATTGTTATTGTGATGCGTTTGATAATTCTGGGATTCTTCTTCCGCTACCGATTGATGAATCCTGCCAAGGACGCACTTGGCCTCTGGTTGACCTCCATTATCTGCGAGATCTGGTTCGCCTTCTCCTGGATTCTTGATCAGTTCCCCAAGTGGTTTCCCATCACTAGAGAAACTTATCTCGACAGATTATCCATGAGATATGAGAGGGAAGGAGAGCCTTGCAAGCTAGCACCGGTTGATTTCTTTGTGAGTACAGTGGATCCACTGAAAGAGCCTCCTCTGATTACAGCTAATACTGTTCTCTCTATCCTGGCCGCGGACTACCCTGTGGACAGGGTATCGTGCTATGTATCGGACGATGGAGCATCGATGCTCACATTCGATTCAATGACAGAAACCTCAGAGTTTGCTCGGAAATGGGTTCCTTTCTGCAAAAAGTACAGTATAGAGCCTCGGGCCCCCGATTTTTACTTTTCTCAAAAAATCGATTACCTGAAAGACAAGGTGCAACCGACCTTTGTAAAAGAGCGGCGTGCCATGAAACGAGAGTATGAAGAGTTCAAAGTGAGGATAAACGCCCTGGTTTCAAAGGCTCAGAAGACCCCTGATGAGGGGTGGGTCATGCAGGACGGAACGCCCTGGCCCGGGAACAATACTCGCGATCACCCTGGGATGATTCAGGTGTTTCTGGGAAGCAGTGGAGCCCATGATATTGAGGGGAACGAGCTTCCTCGCCTTGTCTATGTTTCTCGTGAGAAGAGACCTGGATATCAGCACCACAAGAAAGCCGGTGCCATGAACGCCCTGGTTCGAGTCTCTGCAGTTCTAACAAATGCCCCATTCATTTTGAACCTGGATTGTGATCACTATCTCAACAACTGTAAGGCCGTGCGGGAGGCAATGTGTTTTCTCATGGATCCCCAACTTGGAAAGAAACTGTGCTATGTTCAGTTCCCTCAGAGATTCGATGGTATTGATCGCCATGATCGATATGCAAACAGAAACACTGTTTTCTTCGATATCAACATGAAGGGTCTAGATGGCATCCAGGGGCCAGTGTATGTGGGGACTGGATGCGTTTTCAACAGGCAAGCTCTGTATGGGTATGATCCTCCAGTTTCGCAGAAGAAACCTAAGATGACCTGCGATTGCTGGCCATCATGGTGTTGCTGTTGCTGCGGTTCTCGCAAAAAAACAAAGAAATCATCCAAAAAGTTCTTTGGTAGGAAGAAATCTTCCAAGCCCACTGAAATAACCGCTCCCATCTTCAGCCTCGAAGAGATTGAAGAAGGACTTGAAGGTTACGAAGAACATGAGAAATCATGGTTAATGTCGCAGAAGAGCTTTGAAAAAAGATTTGGCCAGTCTCCTGTCTTTATTACATCCACGCTTATGGAAAATxxxxxxGGTGTTCCAGAGTCTGTAAACTCACCTGCTCTGATAAAGGAAGCCATTCACGTCATAAGTTGCGGATACGAGGAGAAAACTGAATGGGGAAAGGAGATCGGATGGATATATGGTTCAGTGACAGAGGATATCCTGACAGGCTTCAAAATGCACTGCCGTGGTTGGCGATCGGTATACTGCATGCCTCCCAGGCCGGCATTCAAAGGATCAGCTCCTATTAATCTATCAGATCGTTTGCACCAGGTTCTTCGTTGGGCCTTGGGTTCCATAGAAATTTTCCTCAGTAGGCATTGTCCTCTCTGGTATGCCTATGGAGGTAATCTAAAATGGCTTGAAAGATTGGCCTATATCAACACAATCGTGTACCCATTCACCTCAATCCCTCTCGTCGCTTACTGCACGCTCCCCGCCATATGTCTTCTCACAGGAAAATTCATCACTCCAACGCTTACAAGCCTTGCTAGCGTCTGGTTCATGGGACTTTTCTTATCCATCATAGCTACTGGAGTTCTAGAGCTGAGATGGAGCGGAGTGAGCATCGAAGAGTTCTGGAGAAACGAACAGTTCTGGGTCATTGGAGGGGTCTCTGCTCATCTTTTTGCTGTTTTTCAAGGCCTGCTCAAGGTGTTGGGAGGTGTGGACACCAATTTCACAGTCACAGCCAAGGGTAGCGATGAAGAAGACCAATTCGGGGAGTTATACATGTTCAAATGGACGACCCTGCTCATTCCTCCCACTACCTTGCTCATAATAAATCTGGTGAGCTTGGTAGCAGGTGTTTCTGCCGCAGTAAATAATAACTACCAGTCATGGGGACCCCTCTTTGGAAAGCTATTCTTCGCCTGCTGGGTGATATTGCATCTGTATCCCTTCCTCAAGGGTCTTCTGGGAAGGCAGAACAGAACGCCCACTATAGTGATATTGTGGTCTATTCTGCTGGCCTCCATTTTCTCTCTTGTGTGGGTGAGGATCGACCCATTCCTGCCCAAGGTCGAAGGCCCCATTCTTCAGCAATGTGGTGTTGACTGCTAG___CTACCTCTTCTCTTCTGATCATTTATGAATTCTATTCATTGGTATTGAGGTTTATTCTATTCATTTGTATTGAGGTTTTGTGATGGACTGAAGGATAAAACTGAAAGCATTCTGTTAGATAGTTTATGAATGCTGTTCATTCGGATGCAAATATACTGCAATGAACCGAAGGATAAAGCACAAGGATTGGACTGGTACTGTAAGAATGTAATTATGCAATCTTTAAAAAATCGGATATAATGAGAAATTGGCGCTGTGTTCATGTTTAAAAC

Fln Alignment:

sp_v1.1_unigene2530___MEAKAGLVAGSYKRNELMVVPGHDGPKPIRLSTLQDCQVCGDKIGRNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKGSPRVXXXXXXXXXXXXXXXFNLERDRQSVVSHRGNAFDSTPRAAHSIANRSINGDHYALSLPPIMDGDSLSVQRFPHAATVIGNGLDPAKENYGSAAWKERVESWKAKHDKKSGSIKDGIYDPDEADDIMMTEAEARQPLSRKVPTPSSRINPYRIVIVMRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFAFSWILDQFPKWFPITRETYLDRLSMRYEREGEPCKLAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNCKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSQKKPKMTCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEITAPIFSXXXXXXXXXXXXXXXKSWLMSQKSFEKRFGQSPVFITSTLMENxGVPESVNSPALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFLSIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC
Q5DI94______________MEAKAGLVAGSYKRNELMVVPGHDGPKPIRRSTLQDCQVCGDKIGHNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKGSPRVEGDDEEDGMDDLEQEFNMERDRQSVVSHRGNAFDATPRAAHSIANRSINGDNYALSLPPIMDGDSLSVQRFPHAATVIGNGLDPVKENYGSAAWKERVENWKAKHDKKSGSIKDGIYDPDEADDIMMTEAEARQPLSRKVPIPSSLINPYRIVIVLRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFAFSWILDQFPKWFPITRETYLDRLSMRYEREGEPCKLAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSEFARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVSKAQKTPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGSSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSQKKPKMTCDCWPSWCCCCCGSRKKTKKSSKKFFGRKKSSKATEIAAPIFSLEEIEEGLEGYEEHEKSWLMSQKSFEKRFGQSPVFITSTLMENxGVPESVNSPALIKEAIHVISIGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSVYCMPPRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYAYGGNLKWLERLAYINTIVYPFTSIPLVAYCTLPAICLLTGKFITPTLTSLASVWFMGLFISIIATGVLELRWSGVSIEEFWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKGSDEEDQFGELYMFKWTTLLIPPTTLLIINLVSLVAGVSAAVNNNYQSWGPLFGKLFFACWVILHLYPFLKGLLGRQNRTPTIVILWSILLASIFSLVWVRIDPFLPKVEGPILQQCGVDC

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
1476	87		12		0.992554
1480	12	87			0.992554
1485	14		85		0.993533
1673		10		90	0.90298
2071		90	10		0.90298
2080	10	90			0.90298
2142		11		88	0.923564
2162	14		85		0.993533
2297	83			16	0.994512
2298		83	16		0.994512
2299			16	83	0.994512
2466		14		85	0.993533
2535	88			11	0.994385
2675	11		88		0.992527
2700	88		11		0.994385
2716	87		12		0.993502
2721		25		75	1.0
2743		11		88	0.993486
2901	88			11	0.993486
2903	88		11		0.993486
2904		88	11		0.993486
2930	90			10	0.992513
2931	90		10		0.992513
2932			10	90	0.992513
2948		10		90	0.992513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain