SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2519

Length: 1953 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene2519
CATGCTCATAGAAGGTGCTATGGATTTCGACTACCTCCGTTTCTAATGAGGATGGGGTACCTTTGGGACGAGGATTCCATAGCCTCTCTCTCCACTTCCTATGAGGCACCTTCTTACCGTGAGCGCGCTGATAGACTTATAGGGGAAGTAAAAAATATCTTCGATTTAATGTCAGTGGAGGATGGAGTATCCACCAGTCCCCTCAGTGACCTCCATCACCGCCTCTGGATGGTCGATAACGTTGAACGGTTGGGAATCGATAGGCATTTCAAAGACGAGATAAATTCCGCTCTGGATCATGTTTACAGTTATTGGACCGAAAAAGGCATTGGACGTGGCAGAGAAAGTGGTGTGACTGATCTCAACTCAACCGCCTTGGGTCTTCGAACTCTCCGACTACACGGATACACAGTGTCCTCACATGTTCTGGATCACTTCAAAAACGAGAAGGGGCAATTTACATGCTCTGCCATTCAAACAGAGGGAGAGATAAGAGATGTCATCAATTTATTTCGGGCATCTCTCATTGCCTTTCCTGGCGAAAAAAATTATGGAGGAGGCTGAAATCTTCTCTACAATGTATTTAAAAGATGCCTTACAAAAGATTCCGCCCTCCGGTCTTTCACAAGAGATAGAGTATCTTCTGGAATTTGGTTGGCACACAAATCTGCCAAGGATGGAAACAAGAATGTACATCGACGTATTTGGAGAGGACACTACATTTGAGACGCCATATTTGATCAGGGCGAAACTGTTAGAGCTTGCAAAACTGGAATTCAACATTTTTCACTCTCTAGTAAAGAGAGAGTTACAATCTCTCTCGAGATGGTGGAAAGATTATGGATTCCCTGAAATAACATTCTCACGGCATCGTCACGTGGAATACTACACTTTAGCAGCTTGCATTGCAAATGATCCTAAACATTCTGCGTTTCGACTAGGATTTGGTAAAATATGTCATATGATCACGGTTCTCGACGATATCTACGACACCTTCGGAACAATGGAGGAGCTCGAACTCTTAACTGCAGCATTTAAGAGATGGGATCCGTCATCGATAGAGGGTCTTCCAGATTATATGAAAGGAGTGTACATGGCGGTTTACGACCACATCAACGAAATGGGACGAGAGGCCCAGAAGATTCAAGGCTGGGATACAGTCAGCTATGCTAGAAAATCTTGGGAAGCTTTTATTGATGCTTATATGCAAGAAGCCAAGTGGATTTCCAGTGGTTATCTTCCCACGTTCGACGAGTACCTGGAGAATGGGAAAGTCAGCTTCGGCTCTCGCATAACCACACTCGAACCCATGCTGACGTTGGGGTTTCCTCTTCCGCCTCGCATCCTGCAGGAAATTGACTTTCCATCGAAGTTCAATGATTTGATATGTGCCATCCTTCGACTGAAAGGTGACACTCAATGCTACAAGGCTGACAGGGCGCGTGGAGAAGAAGCTTCGTCCGTATCGTGTTATATGAAAGACCATCCTGGAACAACAGAGGAAGATGCTGTCAATCAAGTCAATGCTATGGTCGATAACTTAAGCAAGGAACTGAATTGGGAGTTACTTAGACCCGACAGCAACGGTGTTCCCATCTCTTACAAGAAGCTTGCTTTTGACATTTGTAGAGTCTTTCATTACGGTTACAAATACAGAGATGGCTTCAGTGTTGCCAGTATTGAAATAAAGAATTTGGTGACAAGAACCGTCGTTGAAACTGTGCCTTTGTAACCACACATGAAATGTACAATAATTTCCTAAGTTTCTGATTTCGCTACCTAGACCTGGAGCTTGCCTACGGATGTCAGGTTCGTTGGTCAGCTAATAAAGGCATCCATATCATTATATGGAGGAGGTGGTGGAGTTGATTCGGAACATAGAAGTTACCACATAACACTATAAAATATGTGGCTTCATCACATTATAAAATTTGTCCGTTCATGTCAATGTAC

Ace file of the UniGene sp_v1.1_unigene2519

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	(+)-alpha-pinene synthase n=1 Tax=Pinus taeda RepID=Q84KL3_PINTA	-	-	95%
FL-Next	tr=(+)-alpha-pinene synthase; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	pinene synthase	-	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q84KL3

Fln msg: Overlapping hits, possible frame ERROR between 546 and 527, your sequence is shorter than subject: 578 - 628

Fln protein: HAHRRCYGFRLPPFLMRMGYLWDEDSIASLSTSYEAPSYRERADRLIGEVKNIFDLMSVEDGVSTSPLSDLHHRLWMVDNVERLGIDRHFKDEINSALDHVYSYWTEKGIGRGRESGVTDLNSTALGLRTLRLHGYTVSSHVLDHFKNEKGQFTCSAIQTEGEIRDVINLFRASLxxxxxxxxIMEEAEIFSTMYLKDALQKIPPSGLSQEIEYLLEFGWHTNLPRMETRMYIDVFGEDTTFETPYLIRAKLLELAKLEFNIFHSLVKRELQSLSRWWKDYGFPEITFSRHRHVEYYTLAACIANDPKHSAFRLGFGKICHMITVLDDIYDTFGTMEELELLTAAFKRWDPSSIEGLPDYMKGVYMAVYDHINEMGREAQKIQGWDTVSYARKSWEAFIDAYMQEAKWISSGYLPTFDEYLENGKVSFGSRITTLEPMLTLGFPLPPRILQEIDFPSKFNDLICAILRLKGDTQCYKADRARGEEASSVSCYMKDHPGTTEEDAVNQVNAMVDNLSKELNWELLRPDSNGVPISYKKLAFDICRVFHYGYKYRDGFSVASIEIKNLVTRTVVETVPL*

Protein Length: 579

Fln nts: CATGCTCATAGAAGGTGCTATGGATTTCGACTACCTCCGTTTCTAATGAGGATGGGGTACCTTTGGGACGAGGATTCCATAGCCTCTCTCTCCACTTCCTATGAGGCACCTTCTTACCGTGAGCGCGCTGATAGACTTATAGGGGAAGTAAAAAATATCTTCGATTTAATGTCAGTGGAGGATGGAGTATCCACCAGTCCCCTCAGTGACCTCCATCACCGCCTCTGGATGGTCGATAACGTTGAACGGTTGGGAATCGATAGGCATTTCAAAGACGAGATAAATTCCGCTCTGGATCATGTTTACAGTTATTGGACCGAAAAAGGCATTGGACGTGGCAGAGAAAGTGGTGTGACTGATCTCAACTCAACCGCCTTGGGTCTTCGAACTCTCCGACTACACGGATACACAGTGTCCTCACATGTTCTGGATCACTTCAAAAACGAGAAGGGGCAATTTACATGCTCTGCCATTCAAACAGAGGGAGAGATAAGAGATGTCATCAATTTATTTCGGGCATCTCTCxxxxxxxxxxxxxxxxxxxxxxxxATTATGGAGGAGGCTGAAATCTTCTCTACAATGTATTTAAAAGATGCCTTACAAAAGATTCCGCCCTCCGGTCTTTCACAAGAGATAGAGTATCTTCTGGAATTTGGTTGGCACACAAATCTGCCAAGGATGGAAACAAGAATGTACATCGACGTATTTGGAGAGGACACTACATTTGAGACGCCATATTTGATCAGGGCGAAACTGTTAGAGCTTGCAAAACTGGAATTCAACATTTTTCACTCTCTAGTAAAGAGAGAGTTACAATCTCTCTCGAGATGGTGGAAAGATTATGGATTCCCTGAAATAACATTCTCACGGCATCGTCACGTGGAATACTACACTTTAGCAGCTTGCATTGCAAATGATCCTAAACATTCTGCGTTTCGACTAGGATTTGGTAAAATATGTCATATGATCACGGTTCTCGACGATATCTACGACACCTTCGGAACAATGGAGGAGCTCGAACTCTTAACTGCAGCATTTAAGAGATGGGATCCGTCATCGATAGAGGGTCTTCCAGATTATATGAAAGGAGTGTACATGGCGGTTTACGACCACATCAACGAAATGGGACGAGAGGCCCAGAAGATTCAAGGCTGGGATACAGTCAGCTATGCTAGAAAATCTTGGGAAGCTTTTATTGATGCTTATATGCAAGAAGCCAAGTGGATTTCCAGTGGTTATCTTCCCACGTTCGACGAGTACCTGGAGAATGGGAAAGTCAGCTTCGGCTCTCGCATAACCACACTCGAACCCATGCTGACGTTGGGGTTTCCTCTTCCGCCTCGCATCCTGCAGGAAATTGACTTTCCATCGAAGTTCAATGATTTGATATGTGCCATCCTTCGACTGAAAGGTGACACTCAATGCTACAAGGCTGACAGGGCGCGTGGAGAAGAAGCTTCGTCCGTATCGTGTTATATGAAAGACCATCCTGGAACAACAGAGGAAGATGCTGTCAATCAAGTCAATGCTATGGTCGATAACTTAAGCAAGGAACTGAATTGGGAGTTACTTAGACCCGACAGCAACGGTGTTCCCATCTCTTACAAGAAGCTTGCTTTTGACATTTGTAGAGTCTTTCATTACGGTTACAAATACAGAGATGGCTTCAGTGTTGCCAGTATTGAAATAAAGAATTTGGTGACAAGAACCGTCGTTGAAACTGTGCCTTTGTAACCACACATGAAATGTACAATAATTTCCTAAGTTTCTGATTTCGCTACCTAGACCTGGAGCTTGCCTACGGATGTCAGGTTCGTTGGTCAGCTAATAAAGGCATCCATATCATTATATGGAGGAGGTGGTGGAGTTGATTCGGAACATAGAAGTTACCACATAACACTATAAAATATGTGGCTTCATCACATTATAAAATTTGTCCGTTCATGTCAATGTAC

Fln Alignment:

sp_v1.1_unigene2519___LWDEDSIASLSTSYEAPSYRERADRLIGEVKNIFDLMSVEDGVSTSPLSDLHHRLWMVDNVERLGIDRHFKDEINSALDHVYSYWTEKGIGRGRESGVTDLNSTALGLRTLRLHGYTVSSHVLDHFKNEKGQFTCSAIQTEGEIRDVINLFRASLxxxxxxxIMEEAEIFSTMYLKDALQKIPPSGLSQEIEYLLEFGWHTNLPRMETRMYIDVFGEDTTFETPYLIRAKLLELAKLEFNIFHSLVKRELQSLSRWWKDYGFPEITFSRHRHVEYYTLAACIANDPKHSAFRLGFGKICHMITVLDDIYDTFGTMEELELLTAAFKRWDPSSIEGLPDYMKGVYMAVYDHINEMGREAQKIQGWDTVSYARKSWEAFIDAYMQEAKWISSGYLPTFDEYLENGKVSFGSRITTLEPMLTLGFPLPPRILQEIDFPSKFNDLICAILRLKGDTQCYKADRARGEEASSVSCYMKDHPGTTEEDAVNQVNAMVDNLSKELNWELLRPDSNGVPISYKKLAFDICRVFHYGYKYRDGFSVASIEIKNLVTRTVVETVPL
Q84KL3______________LWDDDSIASLSTSYEAPSYRKRADKLIGEVKNIFDLMSVEDGVFTSPLSDLHHRLWMVDSVERLGIDRHFKDEINSALDHVYSYWTEKGIGRGRESGVTDLNSTALGLRTLRLHGYTVSSHVLDHFKNEKGQFTCSAIQTEGEIRDVLNLFRASLxxxxxxxIMEAAEIFSTMYLKDALQKIPPSGLSQEIEYLLEFGWHTNLPRMETRMYIDVFGEDTTFETPYLIREKLLELAKLEFNIFHSLVKRELQSLSRWWKDYGFPEITFSRHRHVEYYTLAACIANDPKHSAFRLGFGKISHMITILDDIYDTFGTMEELKLLTAAFKRWDPSSIECLPDYMKGVYMAVYDNINEMAREAQKIQGWDTVSYARKSWEAFIGAYIQEAKWISSGYLPTFDEYLENGKVSFGSRITTLEPMLTLGFPLPPRILQEIDFPSKFNDLICAILRLKGDTQCYKADRARGEEASAVSCYMKDHPGITEEDAVNQVNAMVDNLTKELNWELLRPDS-GVPISYKKVAFDICRVFHYGYKYRDGFSVASIEIKNLVTRTVVETVPL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1916	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain