SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2510

Length: 1027 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2510 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SM71_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	dead box atp-dependent rna	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	72%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	72%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 197 aas, your sequence is shorter than subject: 342 - 593

Fln protein: VVTLAVTQGFGRV*DKMSGRMMFHLSSASSTYCASAPMLFRPPCFAGRRIQAGFKALCSSAVAVDKSPEQSRVISLLEKLRSRQLKNAPNVAKLPSKGTANSQKDTKSPTVSSFAEMELAPEIISTIKELNISVPTEVQCLGIPAILGGQSIVLASHTGSGKTLAYMLPLVQLLRKDESKMGMQTKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMISGGGPMKPQEDALNSPLEMVVGTPGRLLQHVTQGHMFYGDIKYVVLDEADTMFDRGFGPDLRKFLYPLRNRAAKSGDQGFQSVLVTATITKAVQKLLDEEFQGIVHIRTSTLHKKIASA

Protein Length: 343

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTTTGGTAGGGTTTAAGACAAGATGAGTGGAAGGATGATGTTTCATCTTTCATCGGCGTCATCGACCTACTGTGCATCAGCTCCTATGTTGTTTAGGCCTCCCTGTTTTGCAGGCCGCAGGATTCAAGCAGGGTTTAAGGCGTTGTGCTCCTCTGCCGTAGCAGTGGATAAATCCCCAGAGCAATCTCGTGTGATTTCGTTATTGGAAAAGCTACGGTCCAGGCAACTTAAGAACGCCCCAAATGTCGCAAAGCTGCCGTCCAAGGGAACTGCTAATTCTCAAAAGGACACGAAGAGTCCCACTGTTTCTTCCTTTGCCGAGATGGAACTTGCACCGGAGATAATAAGCACAATTAAGGAATTGAACATATCTGTTCCCACTGAGGTGCAGTGCCTCGGAATACCAGCTATACTCGGAGGACAGAGCATTGTTTTGGCCTCGCACACTGGCTCCGGAAAAACTCTGGCCTACATGCTTCCTTTGGTTCAGCTTTTAAGGAAAGATGAAAGTAAAATGGGCATGCAAACAAAACCTAAGAGGCCTCGAGCTGTGGTTTTATGCCCTACCCGAGAGCTATCTGAGCAGGTTTTCCGTGTAGCTAAGTCTATATCCCATCATGCACGGTTTAGATCAACAATGATCAGTGGTGGGGGCCCCATGAAACCTCAGGAAGATGCTCTAAACAGTCCACTTGAGATGGTGGTTGGCACACCAGGAAGGTTGCTTCAACATGTTACTCAGGGACATATGTTCTATGGTGATATCAAGTATGTGGTCTTAGATGAAGCAGACACCATGTTTGATCGTGGCTTTGGACCTGACCTTCGTAAGTTTCTATATCCACTGCGAAACCGTGCAGCAAAGTCTGGTGACCAAGGTTTTCAGTCTGTTTTAGTGACTGCGACCATTACAAAGGCTGTCCAGAAGCTACTTGATGAAGAATTTCAAGGAATAGTCCATATACGCACATCAACATTACACAAGAAGATTGCATCGGCA

Fln Alignment:

sp_v1.1_unigene2510___KDTKSPTVSSFAEMELAPEIISTIKELNISVPTEVQCLGIPAILGGQSIVLASHTGSGKTLAYMLP-LVQLLRKDESKMGMQTKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMISGGGPMKPQEDALNSPLEMVVGTPGRLLQHVTQGHMFYGDIKYVVLDEADTMFDRGFGPDLRKFLYPLR
C0PQ26______________RDVPKP-LRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPHLAHG-----DGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
560		75		25	0.996473
576		66	33		1.0
577		33		66	1.0
587	16	83			0.994512
588		16	83		0.994512
589	66	16		16	0.988813
591		16		66	0.988813
592	83		16		0.994512
593	33			66	1.0
594	83	16			0.994512
657		50		50	1.0
658	66		33		1.0
732	60		40		1.0
963	80		20		0.995493
964	80			20	0.995493
965		80	20		0.995493
970			20	80	0.995493
973	20			80	0.995493
974	20			80	0.995493
975		80	20		0.995493
976		80	20		0.995493
977	80			20	0.995493
979	20			80	0.995493
981	80		20		0.995493
982	20			80	0.995493
984			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain