SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2509

Length: 1748 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2509

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJS4_PHYPA	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR61

Fln msg:

Fln protein: MMGSLQCNKWMSFLEDNLLEDVGQPANSFVWPGQAINVHPDCSDSKNDKEDREKLCPRKRAREESCDKHGLKACREKMRRDRLNDRFMELSILLEPGRPPKMDKSAILSDALSLVNQLREKAGELKDSNERLRQSNKELKTEKNELRDEKTRLKAEKERLDQQMKVMMTSPPGFMPHLAVAHAFSAQSQAGNNKTLPIPGFPGMAMWQWMPPAAVDTSQDHALRPPVA*

Protein Length: 230

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGGCCACGGAATGTTTGACTGGGGGCAACCACAAGAATCTAGTAATAAAAAGGTCCAAAATTTTAAGGCCTGTTTGCATTTGATTGACTTACATGGTTGCGTTGCGATACAAATGGCAAAATTGCATATCATGGTGGCGTGAATCAAAGAACAGTCGTTGCAGCAGCAAGTTCATTGTCAACCTGTGGGGCTCTAAGCATGCACGGAACGGACAAAACATTTGTATTGTCACTATGCACGAGCTTGGGTTTTTAGTTCCAGTATTTGATTGATGCATTCAGATCGATGAATTGTCAGTCTGTGAATCCCGGAGATTGCTGGTTGTGGGTTCGATTCCGAACGTGTGCATAAGGAATTACAGACTTCTTTCAATTGGCTGTTACAATTGGGT_-_ATGATGGGATCGCTTCAGTGCAATAAGTGGATGTCCTTTTTGGAGGATAATTTGCTGGAGGACGTGGGCCAACCGGCAAATTCGTTCGTCTGGCCTGGTCAGGCCATCAATGTTCATCCAGATTGCAGTGATTCTAAAAATGATAAGGAGGATCGAGAAAAATTGTGCCCTAGAAAGAGGGCACGAGAAGAGTCATGTGATAAACATGGGCTAAAAGCTTGCCGAGAAAAGATGCGAAGGGACAGACTAAATGACAGGTTCATGGAGCTAAGTATCTTGTTGGAACCTGGGCGGCCTCCAAAAATGGATAAATCTGCAATATTAAGTGATGCTCTTTCTCTTGTGAATCAACTACGAGAAAAGGCAGGCGAGCTGAAAGACTCAAATGAACGACTTCGGCAATCCAATAAGGAATTGAAGACAGAGAAAAATGAGCTTCGTGATGAAAAGACAAGGTTGAAAGCAGAGAAGGAAAGATTGGATCAACAAATGAAGGTTATGATGACTTCACCTCCAGGGTTCATGCCGCATCTGGCTGTAGCGCATGCATTCTCAGCTCAAAGTCAAGCAGGAAATAACAAGACTCTACCTATTCCAGGTTTTCCTGGAATGGCAATGTGGCAATGGATGCCACCAGCTGCAGTTGATACATCTCAGGATCATGCGCTACGGCCTCCTGTTGCCTAA___GCACATTCTTACCATATCTATTGACTTGTCGTCAGTGTCTATTATGACCAGCAAAACTACGACTTTTTTTCAGGTGTTATGCTATTGTTGGTGTTACTGCTTGCATCATCTTGGTAGTCTCTCATTTCTACAGTCATGTCTTCTTTCTGTTGTGGGGTCGAACTCATTGCTGCTGTACTGAAACATGAGTAATTGAATTGAATCTTAAAAGAATGATTCGTGAGCTTTGGGTGGCCACTGGGGACTTATCCCAACAGGCATATAAACAAGAATACAGCTGAGAATAATCTAGTCTTCTCGTGGTTTCAGTTTCTGTTCCAGGAAGATGTCAAATTCATTGCATATTTGGATAAGTGTTCCTTTCCCTACGTTGGAATTTATAAGACGCATAACTACTTTTCATGCTTTTATATCCATAGGAGTACTGTCTCTACCAAGATGTGATTGGCAGTTCCAATATCTGTTCTAGGGCTGTTATCCATAGTAGCCAGTGCACACCTCTGAAGTGAAGGTCAGAATGTGGGTGCATAGTAAGTATGGAATTACATTTGAGAACTGAGCTTGGCCAGCTCCAAATGAGAATGTTGAAATTGATTTTTAATCAAATGCATGATACTGACGAGATGTATCGTAAAAGGAAATGA

Fln Alignment:

sp_v1.1_unigene2509___MMGSLQCNKWMSFLEDNLLEDVGQPANSFVWPGQAINVHPDCS----DSKNDKEDREKLCPRKRAREESCDKHGLKACREKMRRDRLNDRFMELSILLEPGRPPKMDKSAILSDALSLVNQLREKAGELKDSNERLRQSNKELKTEKNELRDEKTRLKAEKERLDQQMKVMMTSPPGFMPHLAVAHAFSAQSQAGNNKTLPIPGFPGMAMWQWMPPAAVDTSQDHALRPPVA
C0PR61______________MMGSPQCNKWMSFLEDNLLEDVSQPANSFFWPAQPVNVQPDCSAIPSDSKNDKEDGEKMCPRKRPRDESCSKHGIKACREKMRRERLNDRFTELSILLEPGRPPKTDKSAILSDALSLVNQLREEAGKLKDSNEQLRQSIKELKTEKNELRDEKTRLKAEKERLDQQMKAMMTSPPGFMPHLAVSHAFSAQSQAANSKTLPIPGFPGMAMWQWMPPAAVDTSQDHALRPPVA

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
188	60		40		1.0
189			60	40	1.0
191	60		40		1.0
192			60	40	1.0
193		60	40		1.0
195	60	40			1.0
196		40	60		1.0
199		60	40		1.0
200	60		40		1.0
201		40		60	1.0
251	85			14	0.993533
292			10	90	0.90298
294	90	10			0.90298
297		10	90		0.90298
300		10	90		0.90298
301	10	90			0.90298
852		10	90		0.90298
860	88	11			0.923564
864	90			10	0.90298
865	90	10			0.90298
867		10	90		0.90298
868	90			10	0.90298
916	90		10		0.90298
918		10	90		0.90298
921		10	90		0.90298
1082		90		10	0.90298
1298		13		86	0.999973
1300	86			13	0.999973
1301	86	13			0.999973
1302			13	86	0.999973
1307		13		86	0.999973
1311	85		14		0.999981
1312	85		14		0.999981
1313	85	14			0.999981
1314	85			14	0.999981
1316	78		7		0.999974
1317	85	14			0.999981
1319		14	85		0.999981
1368	90	9			0.999872
1369	90		9		0.999872
1370	90			9	0.999872
1372	90		9		0.999872
1373	90			9	0.999872
1376	90	9			0.999872
1377		9		90	0.999872
1378	90			9	0.999872
1379		90		9	0.999872
1380	85		14		1.0
1385	90			9	0.999872
1386		9	90		0.999872
1388	90	10			0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain