SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2505

Length: 1414 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2505

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ARF6; ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor	-	-	5.0e-40	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	68%
Blast2go	flower development	GO:0009908	Biological Process	68%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: your sequence is shorter than subject: 292 - 450

Fln protein: RRDLGCHSSLSDSSISLPSNVSSQPVFADSNANIASHASLSTACPLQSILHSLASDESSHYSNMQRAIQPRMPQPSRNLTGPLSQDRQAASASCHSSRRVSNNQMESCPPAGQVESPLPSGGQSIVSQTQPTGLSGGLDENGLLQCTPSLSQLNPPTRTFTKVYKLGSIGRSVDVTRFSGYHELRSELACMFGLEGQLEDPCRSGWQLVFIDKENDVLLLGDDPWEEFVNSVRSIRILSPPEVLQMTQEGMEWLNSISVQQQTSSSSEECVTGQDSRNISSCITSDRSLDY*

Protein Length: 293

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGTCAGATTCGTCAATAAGTTTACCATCTAATGTGTCTTCACAACCAGTCTTCGCTGATTCTAATGCAAATATTGCTTCACATGCATCTTTGTCCACTGCATGCCCTCTTCAAAGCATTTTACATTCACTGGCATCAGATGAAAGTTCTCACTACTCAAACATGCAGAGGGCTATTCAACCTCGTATGCCACAACCATCTAGAAATTTAACAGGACCTCTCTCGCAGGATAGGCAAGCTGCTTCAGCTTCATGCCATTCATCAAGGAGAGTATCAAATAATCAAATGGAATCTTGTCCACCAGCTGGACAAGTTGAATCCCCTCTTCCTTCTGGGGGTCAGAGTATTGTGTCTCAAACACAACCCACAGGTTTGTCTGGAGGCTTGGATGAAAATGGTTTATTGCAATGCACACCGAGCTTGTCACAACTGAACCCACCTACAAGAACCTTTACAAAGGTTTACAAACTAGGATCCATTGGAAGATCAGTAGATGTCACACGGTTCAGTGGCTACCATGAGCTGCGCAGTGAACTGGCATGCATGTTTGGTTTAGAAGGTCAGCTTGAGGACCCTTGCAGATCAGGCTGGCAGCTTGTATTTATTGATAAGGAGAATGATGTGCTTCTCCTGGGGGATGATCCTTGGGAGGAATTTGTGAATAGTGTTAGGTCTATCCGGATACTCTCTCCTCCGGAGGTACTGCAAATGACTCAGGAAGGTATGGAATGGTTGAACTCAATTTCAGTACAGCAGCAAACAAGCAGTAGTTCAGAGGAATGCGTCACTGGACAAGATTCCCGCAACATCAGTTCTTGCATCACATCTGATCGGTCTCTTGATTACTAA___GAATGGGACGAATGTCCACTGTTAAGCAATTTTTTTGATGTGGTGAAGGGACGATGAGCTGTATGTTTCAGTGACCAAAGTATTAAGTGTGTTGTTCTATAGCTCTTTAATTCAAACTGAACTTCCGAGTTTGAATTTGGTGACTGGAAAACATAGCACTGTATTTTTCCTTTTTTCTCTGATCAAAGAGAAGTAAGAACTTAGATGCTTGGTTGCATGGTTCAAGATAGTGACTAATACACTACTTTACGGCCTGTTTCTTTTATTGTACCTTTCTTTTTGGTTATCTCCAATAGTTTCAGACGGGACTACTGTTTTATTTTTAGTATTGTAACAGTACATAACTGTTACATCCCAAAATCCCACTGCTAGCAGAGCCACACTGTAATGAGGAGATTGTTAATAGCAGACCTGTTATGGTATCGCTCTTCTCTGTGTGTAACTTGTGATCTTCTGAGGGCAGGTTGTAGATATGTACCATCAAGACAATGTGCCATGCATATGTGTAAGTATTTCAAAAGTAATTTTGCAAATTCTC

Fln Alignment:

sp_v1.1_unigene2505___ESPLPSGGQSIVSQTQPTGLSGGLDENGLLQCTPSLSQLNPP---TRTFTKVYKLGS-IGRSVDVTRFSGYHELRSELACMFGLEGQLEDPCRSGWQLVFIDKENDVLLLGDDPWEEFVNSVRSIRILSPPEVLQMTQEGMEWLNXXXXXXXXXXXXEECVTGQDSRNISSCITSDRSLD
C0PTP3______________ESDQHSEPSSIAKMDMPAAI---IDEEKSSQKSSKETHNRPQSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDP-NKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQTPSAKLKGCSEDLATKETSRCSDRQDSS--IAGVTAERSSD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain