SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2489

Length: 1254 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2489 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine-dependent methyltransferase, putative	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Methyltransferase type 11	IPR013216	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ97

Fln msg:

Fln protein: MATERAFVFGSVAKDYVNARPRYPPRLFSLLSSLTPKHQLAWDVGTGNGQAALQISEYYERVIATDISKEQLQQAERRPNIRYVLTPPLLTDDALDSIVGPESSVDLVTVAAAVHWFDLNAFYAQVKRVLRKPGGVIAVWVYTKPSVNPAVDEVFERFFERVLPFFDPCGRWAFEEYRTLPFPFPSHPAAGGASVIELEIEETRTLQEYLSFFRTWSAVVNEEGLLSDDFVRQFEAAWGDPPHHARTVKIPLFLKVGML*

Protein Length: 261

Fln nts: TCTCATCTCGGCGGTTTAGAATTTGCTTCTGCTCTTCTTCTTATTTTCCCAAAAGA_-_ATGGCAACAGAAAGAGCGTTTGTGTTCGGGAGCGTGGCCAAGGATTATGTGAACGCGAGGCCTCGGTATCCGCCTCGGCTTTTCTCGTTGCTCTCCTCTCTCACGCCCAAACACCAACTTGCGTGGGACGTCGGCACAGGGAATGGACAAGCTGCTCTTCAAATTAGCGAATATTACGAGCGGGTAATAGCCACAGACATAAGCAAGGAGCAGCTGCAGCAGGCGGAGAGGAGGCCCAACATAAGGTACGTCCTCACGCCGCCTCTGCTGACGGACGACGCACTTGATTCGATTGTCGGCCCTGAAAGTTCGGTGGATCTCGTGACGGTGGCCGCCGCAGTCCACTGGTTCGATCTGAACGCATTTTACGCGCAGGTCAAGCGCGTTCTGAGGAAGCCCGGGGGAGTGATTGCCGTGTGGGTGTACACAAAACCGTCCGTCAATCCAGCGGTGGACGAAGTGTTCGAGCGGTTCTTTGAGCGTGTTCTGCCCTTTTTCGACCCGTGCGGGAGATGGGCATTCGAAGAGTACAGGACTCTGCCCTTTCCTTTCCCTTCTCATCCCGCTGCGGGAGGAGCGTCCGTCATTGAATTGGAGATCGAAGAGACAAGGACCCTGCAAGAGTACCTGAGTTTCTTCCGAACATGGTCGGCTGTGGTGAATGAGGAAGGTCTGCTAAGCGACGACTTCGTTCGGCAGTTCGAGGCGGCATGGGGAGACCCTCCTCATCACGCCCGGACTGTTAAAATTCCGCTTTTCTTAAAGGTCGGCATGCTCTGA___ATGGATGGTTTTGGCTGGGTTTGTATCTGATTCACCTTTTTTCCAAAGGTCGATCGGCATGGTTTGAATTAATGTTTCTGGCTGTTTGTTTTCTCAGTCGTTTTCTCTACATATTCCAACCTAAAGAGAGTCGTGATGTCTCTGGCATACTTTGTTTCTGCTTCAGTGTCTCCACGATCCAAGTTAAAGAGATTAGTGAAATTATAATGTACAAGACTTTCAGCTTGCGACATCTCTAAATCTCTCTTGCAACCATGTGAATCCTAATTTTAGTAAAATTTATCAAGCAATTTATTTAATCTCTTTTAATATGTTTTATTGTCAAATTAAGGATAGATCTGGATTGATTGCATTCAAATATTTGTCGTGAATTATTACCCATGTATATAAAATTTGTATTTTATTAATAGATTACCGT

Fln Alignment:

sp_v1.1_unigene2489___AFVFGSVAKDYVNARPRYPPRLFSLLSSLTPKHQLAWDVGTGNGQAALQISEYYERVIATDISKEQLQQAERRPNIRYVXXXXXXXXXXXDSIVGPESSVDLVTVAAAVHWFDLNAFYAQVKRVLRKPGGVIAVWVYTKPSVNPAVDEVFERFFERVLPFFDPCGRWAFEEYRTLPFPFP---SHPAAGGASVIELEIEETRTLQEYLSFFRTWSAV--VNEEG--LLSDDFVRQFEAAWGD
A9NZ97______________AGLFDKQAKEYLKYRPTYPASWFSELASLTANHQLAWDVGAGNGQASVSIAEHYDRVIATDISKQQLELARKHPKVTYVLTPPVMTDEELTSIVGEGGSVDLVTVATAVHWFDLETFYSQVKRVLRKPGGVIAVWSYVSSSISSAVDEMYRDFIESALPYANLKRPYTLEGYRTLPFPFEPVLESGKGGEGNPVETEMEKDVTLDEYLGLFKSSAAVTTAREKGVELLNESVLRRFRDAWGD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
182	75			25	0.996473
183			75	25	0.996473
184	75			25	0.996473
185			75	25	0.996473
186	75			25	0.996473
189		25		75	0.996473
345		80		20	0.995493
364			80	20	0.995493
468		20		80	0.995493
511	50		50		1.0
590		66		33	0.997452
764	33	66			1.0
920			88	11	0.923564
1082		10		90	0.90298
1084		10	90		0.90298
1085	10		90		0.90298
1103	11		88		0.923564
1112		90		10	0.90298
1133	11	88			0.923564
1160		20	80		0.995493
1166	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain