SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2488

Length: 1325 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	transferring glycosyl groups	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSN7

Fln msg:

Fln protein: MVKLNMRSFLWGVLIVIVLCSAYLGEGKKLDPTPTPWPEQFHSVLYINNSGSLQVTDLWYDWSKGRNFNIIQKQLGRKLYDLEWDNGTSFYYYLDKDECKRTHFDVGILRPNWLEGANYLGTKYVDGFLCNGWEKVDFIWYYEDTVTNRPVYWRFFTGMTVHVMTFDVGALLEDAEWQAPLYCFDKAGAVEDPKEKASPAKGYAPLYRFLSGFKDHTIFTTDS*

Protein Length: 225

Fln nts: CGTCGTGACCTTGGGTTTGAGTTTGAGTTTGAACTCAACTCTAGATTACTCTCGGTTGAAGTTATATCTGCTTCGTATTTCCTTTGGATGGGGCAAAATCAGAGGACGGCAGCGGAAGCAGGCTGTACGAAGCGAAGCAGATGGAGTATTGTGCAGCTTAATATAGTTTTAATCAACTTTGATGAATTGGGTATTATTTTTATCAGTTGGGGCCTGACCTTTCTGTCATCAGAGGCGACTTTCGGCAATTGGGGCTCGCCTTTCTCTCATCAGGAACCATTTTCAGCAATTGGGTCCCTACAATTTTTTTGAAATTTTCCTGATATAGCCCTCAACCCTCAATCATTTTGGAACAGAAA_-_ATGGTGAAATTGAATATGCGTTCCTTCTTGTGGGGTGTATTAATTGTTATTGTTCTGTGTAGTGCATATCTGGGCGAAGGGAAAAAGCTTGATCCTACGCCTACTCCGTGGCCAGAGCAGTTCCATTCTGTACTGTATATTAACAACAGTGGCTCTCTGCAGGTGACTGATCTCTGGTACGACTGGTCTAAGGGGAGGAACTTCAACATTATTCAGAAGCAACTGGGTAGGAAATTGTATGACTTGGAATGGGACAATGGGACCTCCTTCTACTACTATCTGGATAAAGATGAGTGCAAAAGGACGCATTTTGATGTGGGGATCCTGAGACCCAATTGGCTTGAAGGCGCCAACTACCTTGGCACGAAATATGTGGATGGCTTCCTCTGTAATGGGTGGGAGAAGGTGGATTTCATATGGTACTACGAGGATACTGTCACCAACAGACCTGTGTATTGGCGTTTCTTCACAGGCATGACAGTTCATGTAATGACATTTGATGTGGGGGCATTGCTGGAGGATGCAGAGTGGCAGGCACCCCTTTACTGTTTTGACAAGGCTGGGGCTGTGGAGGATCCAAAGGAAAAGGCTAGTCCTGCTAAAGGATATGCTCCCCTATATAGGTTTTTGTCTGGTTTTAAGGACCACACCATCTTCACCACAGATTCATAG___ATTTATCTGCCTATCTCTGCAATGCACAATGCATTACAGTGCTGTCCTTGATAAAAGTAAAGATGTTCCATCCCTCCTAGTTATCTCTTGTTCAAAGAAGTTAGCTTACCCCAGCCTTTGAAGCTCAACAATTAATTCAGGGGTATGTTAGGAAGTTCTTCAGGAATTCTTAAGCAAACAGCAGCTTAAATAGAGATATTCCTTTGAAAAATAAAGAACCACCCTTTTGAGATTTTTTTAATCTCCTTGTATACATTATAACCCGAGTTCGCAGTGAGTGACAGCCAAGGTCAC

Fln Alignment:

sp_v1.1_unigene2488___MVKLNMRSFLWGVLIVIVLCSAYLGEGKKLDPTPTPWPEQFHSVLYINNSGSLQVTDLWYDWSKGRNFNIIQKQLGRKLYDLEWDNGTSFYYYLDKDECKRTHFDVGILRPNWLEGANYLGTKYVDGFLCNGWEKVDFIWYYEDTVTNRPVYWRFFTGMTVHVMTFDVGALLEDAEWQAPLYCFDKAGAVEDPKE--KASPAKGYAPLY-----RFLSGFKDHTIFTTDS
A9NSN7______________MVNMKMSCFLWGVLIVIVLCSAYLGEGKKLETTPTPWPEQFHSVLYINNSGSLQVTDLWYDWSKGRNFNIIQKQLGRKLYDLEWNNGTSFYYYLDKDECKRMHFDVGILRPNWLEGAKYLGMKYVDGFLCNEWEKVDFIWYYEDAITNRPVHWRFFSGMSVHVMTFEVGAVLEDAEWQAPIYCFDKAVAVEDPKEKAKASPVKGYAPLYPYFHKRLLSGFNEHNIFTIDS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
276	66		33		0.997452
338		66	33		0.997452
454		50		50	1.0
456		50		50	1.0
553		20	80		0.995493
702		25		75	0.996473
746		66	33		0.997452
751	33		66		1.0
753		66	33		1.0
754		66	33		1.0
755			33	66	1.0
761		66	33		1.0
762	33			66	1.0
764	33			66	1.0
765	33	66			1.0
766	66		33		1.0
767		66	33		1.0
769		66	33		1.0
770	66		33		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
15	32	GTTTGA GTTTGA GTTTGA	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain