SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2485

Length: 1234 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2485

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	avirulence-responsive avirulence induced gene aig	-	-	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MERRGAGTSKVSTIVLVGRTGNGKSATGNSILGRKAFQCRSGSATVRGTCELQQVQMKDGRKLNVIDTPGLFDPTVNQDVIGKEIAKCIDLAKDGVHAVLFVLSVRNRYTPEEAAALQTLQMLFGEKILNYMVVIFTGGDELEENEETLEDYLREIPLDLQEILRKCNDRKVLFDNKTTSETVKEKQKTELLKHIDIIIGQNGGHPYSNELFHEAQEWSSKHKDVDSGWYSNEQVQIYIQNIQKAQEEQLKESQETVEEHLRMATKVMEQRVAEQRSAREEIEKKSREKIRELEEELRIREDSASRNPNRLQFPESVSLKLRQFCTVL*

Protein Length: 330

Fln nts: ATGGGGATATGGGGAGTGTGAAGTTTCAGGTTGAAACGATAGA_-_ATGGAAAGAAGGGGAGCAGGTACCAGTAAGGTGTCCACTATAGTGTTGGTAGGCCGGACGGGCAATGGTAAAAGTGCAACTGGTAACTCCATACTTGGGCGCAAGGCCTTTCAGTGTCGCTCTGGTTCTGCGACAGTTAGAGGCACTTGTGAATTGCAACAAGTGCAGATGAAAGATGGCAGAAAATTGAACGTGATCGATACACCAGGTCTCTTTGACCCGACTGTCAATCAGGATGTTATCGGCAAAGAAATTGCCAAATGTATTGACCTCGCAAAGGATGGTGTCCATGCAGTTCTTTTCGTACTTTCCGTTAGAAATCGATATACCCCAGAAGAAGCAGCTGCTTTGCAGACCTTGCAAATGTTGTTTGGTGAAAAAATTCTCAATTACATGGTGGTTATCTTTACTGGTGGCGATGAGTTGGAAGAAAATGAAGAAACATTAGAAGACTATTTGCGTGAGATCCCACTTGACCTTCAGGAGATTCTAAGGAAGTGCAATGATAGGAAGGTCCTTTTCGATAATAAAACCACATCAGAAACAGTGAAAGAAAAGCAAAAAACTGAATTGTTGAAGCATATAGACATTATAATTGGTCAAAATGGAGGCCATCCCTATTCTAATGAGTTGTTCCACGAAGCTCAGGAATGGTCAAGTAAGCACAAGGATGTCGACTCTGGTTGGTATTCGAACGAACAAGTACAGATTTATATCCAAAATATTCAAAAAGCACAAGAGGAACAGCTTAAGGAATCGCAGGAAACGGTAGAGGAGCACTTGCGTATGGCTACAAAAGTAATGGAACAACGGGTGGCAGAGCAGCGTTCTGCACGAGAAGAGATTGAGAAAAAATCACGTGAAAAAATCCGTGAGCTTGAAGAGGAACTACGAATTCGAGAGGACTCAGCTTCGCGAAACCCTAACCGGCTTCAATTTCCGGAATCAGTTTCGCTAAAACTTAGGCAGTTCTGTACTGTTCTCTAATTCTGTTTCTAAAACTCAGCAATATATATAATCCAAAGGCTTCCGATGTGTTGTAGGTGTTTATTTTAGTATGTGCGACCTAGTTTTGAAATTTACGATCTTGATTTACTAGTTGAATATCTCTCAACCTTTAAGCTTTACCAGCTTTGTGTGACTGGACCTGAACAAAGGGATGAGTGATTCAGTTTGGAATTCATCTTTATG

Fln Alignment:

sp_v1.1_unigene2485___TSKVSTIVLVGRTGNGKSATGNSILGRKAFQCRSGSATVRGTCELQQVQMKDGRKLNVIDTPGLFDPTVNQDVIGKEIAKCIDLAKDGVHAVLFVLSVRNRYTPEEAAALQTLQMLFGEKILNYMVVIFXXXXXXXXXXXXXXXYLREIPLDLQEILRKCNDRKVLFDNKTTSETVKEKQKTELLKHIDIIIGQNGGHPYSNELFHEAQEWSSKHKDVDSGWYSNEQVQIYIQNIQKAQEEQLKESQETVEEHLRMATKVMEQRVAEQRSA
B8LPU8______________TTGVTTLVLVGRTGNGKSATGNSILGRKAFKSRSRSGAVTQTSELQHVEMNDGRQLNVIDTPGLFDPTVNPDFLGKEIVKCIDLAKDGLHGVLFVLSVRNRFTAEEAAALESLQMLFGEKILNFMVVIFTGGDELEENLETLEDYLHESPLELQELLRQCNHRKVLFNNKTTSETTMARQITELLKQIDIVVAQNGGHPYSNELFHEAQERLNRQKDIDSGGYSKEEIQFLQKQMENAYAEQLKQLTEMVEEKLRITTERLEQRLSSEQSA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
971		55	44		1.0
979	55	44			1.0
980	55		44		1.0
1000	50			50	1.0
1014		50		50	1.0
1025			50	50	1.0
1052	57		42		1.0
1061	57			42	1.0
1083		14		85	0.993533
1190		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain