SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2482

Length: 1457 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2482 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to mRNA capping enzyme family protein; K13917 mRNA-capping enzyme [EC:2.7.7.50 3.1.3.33]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	61%
Blast2go	mrna capping enzyme family protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.7.7.5-	-	0.0	61%
AutoFact	Polynucleotide 5'-phosphatase.	EC:3.1.3.33	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Dual specificity phosphatase, catalytic domain	IPR000340	-	71%
Blast2go	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	71%
Blast2go	mRNA capping enzyme	IPR001339	-	71%
Blast2go	Protein-tyrosine phosphatase, active site	IPR016130	-	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7THB7

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 416 - 677

Fln protein: MDLNASPQPDDDEEEQEHEEVYEVYEEEEQQHQQPHEVEEERAEEYVESGVETFRREREERRRRMKRERPDDGSKQTFKTPRVESRPNDRMKHIPDGWIGCPAVGQPLANLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVNIFVYEALRFFHNHKQSGQNKCILVHCTHGHNRTGFMIVNYLVRIQGLTVKEALQRFAAARPPGIYKQDYIDALFRFYHERKPETMLYPSTPEWKRSVSVDLNGNAMEDEDDDGDIMAALQEVEEENELMTNDDILGDAIPSAQQTDMQKICCMALGVESHGNSHFPGSQPVSLDRAHLQLLRQRYYYATWKADGTRYMMLITRDGCYLIDRKFNFRRVQLRFPKR

Protein Length: 417

Fln nts: ATGGGGCACGAGGTGGAAGTCGCCTGGTTATGGTTATAGTTAACGCCCTAGTAGTAGGGTAGGGAAGGGTATATAAAGAAGGCCGTGGTTCAATGCGGTGGAGGGACGCGGGCAGAGCGATCCCCACTTTGACAAACACAGGCAGAGAGGCAAAATAATAACAACTGGAATTGTTGCTTTCAACAACTAAGCAGTTGATCGAAGCCCC_-_ATGGATTTAAACGCCTCTCCTCAGCCTGACGACGACGAAGAAGAGCAGGAACATGAAGAAGTCTATGAAGTCTATGAGGAAGAGGAACAGCAACATCAACAGCCGCACGAAGTCGAGGAAGAGCGAGCCGAAGAATATGTTGAGTCCGGCGTCGAGACATTCCGAAGGGAACGTGAAGAGAGGCGACGAAGGATGAAAAGAGAACGCCCGGATGATGGATCAAAGCAAACTTTCAAAACACCACGAGTGGAGAGTAGACCCAATGATAGAATGAAGCATATCCCCGATGGTTGGATCGGTTGTCCAGCAGTTGGTCAGCCTCTTGCAAACTTAATTCCTTCGAAAGTGCCTCTTGGGGAGGCCTTTAATGATTGTATTCCTCCTGGAAGTAGATATTCTGTCAAGCAAGTGTTGCACCAACAACGGGTTTTGATGAGAGAGGTGGCTTTGGTAATTGATCTGACAAATACTTCACGCTACTATCATCCTTCAGATTGGTCAAACAAGGGCATCAAGCATTTCAAGATTGCATGCAAAGGACGAGATGCAGTTCCAGACAATGAATCTGTAAATATTTTTGTGTACGAAGCATTGCGTTTCTTCCATAATCATAAACAAAGTGGGCAGAACAAGTGTATTTTGGTTCATTGTACCCATGGCCATAACCGCACTGGGTTTATGATTGTTAATTATCTTGTTCGCATACAAGGCTTGACTGTTAAAGAGGCTTTGCAGCGCTTTGCTGCTGCAAGACCTCCAGGGATTTATAAACAGGATTATATTGATGCATTGTTTAGGTTTTATCATGAGAGAAAACCAGAAACAATGCTTTACCCTTCCACACCAGAATGGAAAAGATCAGTTAGTGTTGATCTTAATGGCAATGCAATGGAGGATGAAGATGATGATGGTGACATTATGGCTGCTTTGCAGGAAGTTGAGGAAGAAAATGAATTGATGACAAATGATGATATCCTAGGTGATGCAATTCCTTCAGCTCAGCAAACAGATATGCAGAAGATTTGTTGTATGGCGCTTGGAGTAGAGTCCCATGGAAATTCTCATTTTCCAGGATCTCAGCCAGTTTCATTGGACAGAGCACACCTACAGCTCCTGAGGCAGCGGTATTATTATGCCACATGGAAAGCTGATGGAACTCGATATATGATGCTTATCACACGTGATGGATGTTACTTGATTGATAGGAAGTTCAATTTTCGTAGGGTTCAACTCCGTTTCCCTAAAAGGG

Fln Alignment:

sp_v1.1_unigene2482___PDDGSKQTFKTPRVESRPNDRMKH-------IPDGWIGCPAVGQPLANLIPSKVPLGEAFNDCIPPGSRYSVKQVLHQQRVLMREVALVIDLTNTSRYYHPSDWSNKGIKHFKIACKGRDAVPDNESVNIFVYEALRFFHNHKQSGQNKCILVHCTHGHNRTGFMIVNYLVRIQGLTVKEALQRFAAARPPGIYKQDYIDALFRFYHERKPETMLYPSTPEWKRSVSVDLNGNAMEDEDDDGDIMAALQEVEEENELMTNDDILGDAIPSAQQTDMQKIC--CMALGVESH-GNSHFPGSQPVSLDRAHLQLLRQRYYYATWKADGTRYMMLITRDGCYLIDRKFNFRRVQLRFP
D7THB7______________PDDRS---VNGPSVHDRPFQTRNHRSHDRNKLPPGWLDCPAFGQEINFIIPSKVPLGESFNDLVAPGKRYSSRQVIHQQRVLGRKLGLVIDLTNTTRYYPSSDWEREGIKHIKIACKGRDSVPDNAAVNSFVYEVSQFLSRQKQT--KKYILVHCTHGHNRTGYMIVHYLMRSQSMSVTQAIKIFADARPPGIYKHDYIDGLYAFYHERKPELVICPPTPEWKRSSDLDLNGEAMPDDDDDGVSAAPGHEKHEVDVVMTNDDKIGDDIPPEQQKALQQFCYQSLKLPVGGHRGPSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLIDRTFTFRRVQMRFP

SNPs (tot: 6)

Position	A %	C %	T %	Probability
1348		50	50	1.0
1356		25	75	0.996473
1359	25	25	50	0.995533
1360		75	25	0.996473
1361		33	66	0.997452
1364	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain