SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2479

Length: 914 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2479 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	56%
Blast2go	signal recognition particle subunit	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	71%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
442	18	81			1.0
448	18	81			1.0
449		81	18		1.0
450			18	81	1.0
455		18	81		1.0
456			18	81	1.0
457	18		81		1.0
459	81		18		1.0
780	10			90	0.90298
781		90	10		0.90298
782		10		90	0.90298
784	10		90		0.90298
785	10			90	0.90298
786		90	10		0.90298
787		90	10		0.90298
790		10		90	0.90298
791		90	10		0.90298
794			10	90	0.90298
799		33	66		1.0
800		33		66	1.0
801	55	22		11	0.999999
802		33	11		1.0
804			11	88	0.923564
805		16		83	0.994512
807	16			83	0.994512
811		16	83		0.994512
814	16			83	0.994512
815	16	83			0.994512
817	83		16		0.994512
821	16		50	33	1.0
823	50		50		1.0
824	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain