SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2478

Length: 883 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2478

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem II 11 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9RG39_RICCO	-	-	1.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	0.0	75%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
111			66	33	0.997452
112		66	33		0.997452
113	66		33		0.997452
114	66		33		0.997452
115			33	66	0.997452
184	40			60	1.0
222	20		80		0.995493
225	16	83			0.994512
227		83	16		0.994512
228	83		16		0.994512
229			16	83	0.994512
282	85		14		0.993533
283	85		14		0.993533
689	87			12	0.992554
835		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain