SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2444

Length: 1405 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2444

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Arginine decarboxylase n=1 Tax=Selaginella moellendorffii RepID=D8QQK9_SELML	-	-	50%
FL-Next	sp=Arginine decarboxylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	arginine decarboxylase	-	-	61%

Source	InterPros	Term	Type	Identity
Blast2go	Arginine decarboxylase	IPR002985	-	61%
Blast2go	Alanine racemase/group IV decarboxylase, C-terminal	IPR009006	-	61%
Blast2go	Orn/DAP/Arg decarboxylase 2, C-terminal	IPR022643	-	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ6

Fln msg: your sequence is shorter than subject: 357 - 479

Fln protein: ALASHHSVIVFDVLSVSQQSAAKSMGNLESLGESRVQRITINDKTVFSDTSVQEGLHSSELHAGSVVPCHTNRKLRKDCNPGEYLLSTLYDIKKTICQQNVQEAYSDAKRLKREAHSLFKLGFLSLEHRAGVEDVYDAISFNVLKFCRDSELPDEVDKLKKYLAAIYHINLSIFRSVPDSWAINQVFPIMPLHRLHEKPNTQATLADLTCDSDGKIEHFIGPSGKVESVLSVHHLCEGEPYYMGLFLAGVYQEILGSAHNLFGGINVIHVRSKGSDIVDKATNRKGKGQYGFERIVRGQTTKEVLHSVRHDVSNIIEDIEREAESAVSKGCLSIEGAKTLLENYKCSLDFYTYLSK*

Protein Length: 358

Fln nts: GAGCTTTGGCATCACATCATTCAGTCATTGTGTTTGACGTATTGAGTGTCAGCCAGCAGTCAGCAGCTAAATCCATGGGCAACCTGGAAAGTTTGGGTGAAAGTAGAGTACAAAGGATTACTATAAATGACAAAACAGTATTTTCAGATACATCTGTTCAAGAGGGTCTACATTCAAGTGAATTGCATGCAGGGTCAGTTGTTCCTTGTCATACAAACAGAAAGCTTCGGAAAGATTGCAATCCTGGTGAATATCTACTATCAACTTTATATGATATTAAAAAAACCATCTGCCAACAAAATGTCCAGGAAGCTTACAGTGATGCAAAGCGGTTAAAAAGAGAAGCCCATAGCTTATTTAAGCTTGGTTTCCTAAGCCTTGAGCATAGGGCAGGAGTTGAAGATGTCTATGATGCTATTTCATTTAATGTATTAAAATTTTGTAGAGACTCTGAGTTACCAGATGAAGTAGATAAGCTTAAGAAATACTTAGCAGCAATATATCATATCAACTTATCTATTTTCCGTTCGGTACCTGATTCATGGGCCATAAATCAAGTTTTCCCTATAATGCCTTTGCATCGGTTGCATGAGAAGCCAAATACACAGGCAACCTTGGCTGATTTGACATGTGACAGTGATGGAAAAATAGAACACTTTATTGGACCTAGTGGGAAGGTTGAAAGTGTGCTCTCTGTGCATCATTTGTGTGAAGGAGAGCCATACTACATGGGATTGTTCCTTGCAGGTGTCTATCAGGAAATATTGGGAAGTGCTCACAACCTATTTGGTGGAATTAATGTCATTCATGTAAGGTCTAAAGGATCAGATATTGTAGATAAAGCAACAAACAGAAAGGGCAAAGGGCAATATGGTTTTGAGCGAATAGTGCGGGGTCAGACCACCAAAGAAGTTTTACACTCTGTTAGACACGACGTAAGTAACATAATTGAAGATATAGAGAGGGAAGCAGAAAGCGCTGTCAGCAAAGGTTGTTTATCGATAGAAGGTGCTAAAACACTCCTGGAAAATTATAAATGCAGCCTCGATTTTTATACTTACCTTAGCAAATAA___ATAAAATTTACGACCTAGTTTTGCATACTTGTATAGTACCTGACCATCCTTACGTACAGTTTTAGTGAGATATTCATCTGGGAACACCCTCATGTATAGGCAATTTTGGCAGCGCTTTAGTTCCCAGCCACTATAGATCATTATTTAACCCAGAAATAACCTACCTTCTTTGATTTGAAGCATGATCCATTTACAGTATTTACCATTTTGGTGTTCAGTTATTGGGGGAAGGAAAAAAATGTATATTTTAGTGCCTAATCGACCTTATTGCAGTGCTATTTTAACTAACTGTTTCTTCTATGGACACATTTTATTTTCTGTATAATATAAAA

Fln Alignment:

sp_v1.1_unigene2444___ALASHHSVIVFDVLSVSQQSAAKSMGNLESLGESRVQRITINDKTVFS
B8LKQ6______________ALASHHSVIVFDVLSVSQQTAPKSIGNLESLGESRVQKFTIIDKTAYS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
660	14			85	0.993533
662	85		14		0.993533
663			14	85	0.993533
664			14	85	0.993533
729	87		12		0.992554
730		87	12		0.992554
731	87		12		0.992554
732			14	85	0.993533
876			50	50	1.0
893		50		50	1.0
967		10	90		0.90298
969	90			10	0.90298
970	90	10			0.90298
972		90		10	0.90298
976	90	10			0.90298
977	90	10			0.90298
978			90	10	0.90298
979		90		10	0.90298
987		10	90		0.90298
1189	33		66		0.997452
1276	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain