SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2443

Length: 1177 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2443 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9SY45_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	glycosyl hydrolase family 1 protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT85

Fln msg: your sequence is shorter than subject: 272 - 508

Fln protein: KQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRNDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSFLPKSKSKSTASYLLDHTTQYRSDI*

Protein Length: 273

Fln nts: AGAAGCAAGGAGGCTCAATTGGCATCACTCTGGATTCCCTCTGGTTTGAACCTATAACTGACTTGTCCGAAGACCAGGATGCTGCTCAGAGGGCCCTCGATTTCCAGCTTGGATGGTTCATGGATCCCCTTTATTTTGGAGATTATCCAGCATCCATGCGACAGTTGGTAGGTGACAGATTGCCAGTATTTTCCAACGACCAATCCAAATTGCTCAGAGGTTCTTTTGATTTTGTGGGCATCAATCATTACACAACACTATATGCCCGAAATGACAGACTTCAAATTCGCAAGAGACTGCTGAACGACGCATACGCAGACTCTGCCGTCATCACAACCTCTTTCCGGAAAGGAGTTATGATCGGAGAACGGGGTGCCTCACGTTGGCTCTATGTCGTTCCATGGGGAATCCGTAGTTTGATGATATACATAAAACAAAGATACGACAACCCACCAATTATTATCACAGAGAATGGCATTGATGATCCGAATAGTCCTTTAATATCCTTGGACAAAGCACTGCAGGACACCAAGCGAATAGATTACCATAGGGACTACCTTTCAAATCTCTCAGTTGCCATCAGGAACGATGGATGCGACGTGCGAGGTTACTTTGTGTGGTCACTGCTGGACAATTGGGAATGGAATTCGGGATTCACAGTGAGATTTGGGTTATATTTCGTAGATTACAAGGGCAACCTCACGAGATATCCAAAAGCTTCTGCAGATTGGTTCAAAAGCTTTCTGCCAAAATCAAAATCAAAATCAACCGCCTCTTACCTGCTGGACCACACGACACAATATAGATCCGATATATAA___TTAGATATATTTATTCATTCTGTAAAATCGCAAATTCAATTATTTTGAAAGCGCGCCAAAGCGATTGGATTGATTCAACTGTATTTACTGATTGTATGTATTGTAAAAATTCAAATTTGTTGGACAAGATACACAGAAATTAGATGTGTGTATTGTAAAAATTGAAATTTATTGGAGGAGATCCAGAGAAATTAGATATAGACGAGCGCTGTCCTCTCACCTAAGCAGATGCTAGAAACAGGAAGCATGTGTTTGTCGTGAGAGAGAGAGGCCTCAATAATTCACTGAATCTTGACGTGTACTGTAATGCAAGCAATGACGATGTACTCAAAGGACAAAATTTTCGTATTCAAAATTAC

Fln Alignment:

sp_v1.1_unigene2443___KQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRNDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADW
C0PT85______________KQGGVIGITVDGEGSEPFTDAEGDKEAAQRRLEFQFGWFLDPLYFGDYPAIMRKKVGDRLPQFSPDEVALLLGSVDFVGLNHYTTRYV----IPSFQSSEDEFFVDQDIHRIAEWEGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKSLAKAIR-EGVDVRGYFAWSLIDNFEWSQGYTKRFGLVFVDYKNELKRHPKSSAHW

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
696	14	85			0.993533
709		83		16	0.994512
710		83	16		0.994512
712			16	83	0.994512
714		83	16		0.994512
715	16			83	0.994512
717	16			83	0.994512
719		16		83	0.994512
720		16	83		0.994512
722	16			83	0.994512
723	83		16		0.994512
724	83		16		0.994512
726	83	16			0.994512
729		16		83	0.994512
731	16		83		0.994512
732		16		83	0.994512
816	20		80		0.995493
818			20	80	0.995493
819		75	25		0.996473
971	66		33		0.997452
1097		20		80	0.995493
1098		20	80		0.995493
1100			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
410	430	TTGATT TTGATT TTGATT TTG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain