SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2429

Length: 3021 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2429
CGTCGTGACCTTGGCTGTCACTCACTCTTAACCAGACTTTGGCTGTCGTGCTATTGCTTCTTCTGTACATCTTTATCTGTTTGTTTCTACAGTGCCGAGTCTGTCTCTGTCAAAGAGCAATGGTGTATTGGATGGGATTGGATTCTGAAAGTTGCGAGGTTCGAACTTATCACCCCTGGTCAACAAGAACTTCCAGTCCATTGTCTGTCAGTTTGTTGGATGGTTTCTTAAGTAGTAGGTAGGTAGTTGAGACGTGGTTGGAAGAAATGTCTGGCGGCCATTGCTGATCGAGCGGAGGAGCAGGGGGAAAGTGAAGAAGGAAAAGAATAAATCTTTCGTGGTGGAGTGTTTATTGGAGATCATCAGGGCCCTGAGAATGGGGTCCTGTCTTTCTACGGATGGAGGAGGTTCCTCGTATGGGTGCTGCAATGGTTCGTGTGCGACTTCCAGTGCTAAGAAGAGGGACAGGAGGAACAAAACTTCCCTTCTAGCTGCGGCTGCTGAGGCTCAAACTGATGCCCATTTGGCCAGGATTCCTGGCAGGATGTGTATGAGTGGGTCAAGTAATATTGCATGTATGTTTACTCAGCAGGGTAGAAAGGGGACTAATCAGGATGCCATGGTTGTTTGGGAGGAATTTGGGTCGAACAAGGACACTGTGTTCTGCGGAGTATTCGATGGGCATGGGCCTTATGGTCACTTGGTTGCGAAAAGAGTCAGGGACTCGCTGCCCTCGAAGCTGTGTTCCCATTGGGAAGCCATAACCAGAGGCGATGAGGGCAATAGCAATATACGAGAAGCTGGTACTGCAGTGGGAAGCATCAATTCGGATGAAACAGCTTCTATAACCATGGATGAGGAATGGAAAGAAGCCGATGGAGAGGACACAGAGAGCCTTGAGGAGAAAGCCCCTGATATGCTCACTGCGTGGAAAGAATCCTTTCTCAAAGCCTTTAAAGTTATGGATAAGGAGCTCAGGTTTCATCCCACAATTGATTGCTTCTGCAGCGGAACCACCGCTGTGACTCTTTTAAAGCAGGGAGAAGACCTGGTGATGGCTAACGTAGGAGACTCGCGCGCAGTTCTGGGCACGAGAGATGATGATAATTCCCTGAAAGCAGTGCAGTTGACTGTGGATTTGAAGCCCAATCTACCAAAGGAAGCTGAGAGGATTAAACAATTCAAAGGACGGGTTTTTGCACTGCAAGATGAACCTGACGTGGCACGGGTGTGGTTACCCCATGACGACTCTCCTGGTCTGGCAATGGCAAGAGCATTTGGAGATTTCTGTCTAAAGGATTTCGGTCTCATTGCTGTGCCTGATATTTCGTACCGTCGTCTCACAGAAAGCGACGAGTTCATTGTACTGGCTACTGATGGGGTATGGGATGTGCTGTCTAACAAGGAAGTGGTAGATATTGTGGCATCAGCTCCTACTCAAGCAACTGCAGCCAGATCTTTAGTTGAATTCGCTGTTCGAGCATGGAGACTGAAATACCCAACTTCCAAAGTAGATGATTGTGCAGTAGTATGCCTTTTTCTCAGTGGTCTTCCTTCAATTTCTGAGGCAAAAGCAAGTAAGGATACGGTGACCTCAAAAGAACAACCTTGCCCTAAAGAGGCTATTCCAGGGCCAGTCACTACACTGTCAGAAGGAACAATAAAAACAGATGAGTGCCCTGCAGATGGAGAGGAAAATAGTCCTAGATTAGGCCGTCTAAATACTGTAAGAAATAATGTGAATGATGTTGTCAAAAATCGATCAGAAGCAGTTTCAGAAATAATTGAAACATCCACCACAGATTTACTGAAGCACCCAGAGAGGTCTCAATCCCGTAGAAGCCTTGCTGAATGTCTCTCTGTGACTGATGAGGATGAATGGTCTGCACTAGAAGGTGTTAGTAGAGTGAACTCGCTTCTGAATCTTCCGAGGTTTTTGACGGGAGAAAGAATGTCCGGAGGTTTGAGGAAGCGGCATTGATTGATTAGTGAAGTCATTCAGTTTCAAGTGCTGCAACAATTTGTTATATTACATTATTTCAAGCTCCAGCCTCCCGCAGGATATAGTTGAATACCTGGGAGGGAGGTGATTCTGTAACAATATCTGTTGATTTGCTGAAGGCATTTTGAAGCCATGCAAATTCGTAAACACGTGATGTCTAAACTCGGGTTTCAAGGTTCTATTCCTTTAATGTTGAAGGAAGGAACTGGATATGGATTCCTGTTATGTTGTCGCTCTCGTACATAAAAGCAAATTTCAAGGTTCAATTCCTTTAATGTTGAAGGAAGGAACTGGATATGGATTCTTGTTATGTTGTCACTCTCGCACAGCAAATGCAAAGGGAAGAGTTAAGCAGAAGACCTCTGAGGGCAGGACAATCAGATTTGTCTTCATTGGCTTTAACAGAAAACTGGCATGCCTATGGGGTTGTGGCAGATACAGTAAAATATATCCTGGGCTAATTTTTGGACTAAGCCTATTGTGGTAGTATCAGATTCAGTTTAAAGAAATGTCTTGGGTTAAATTTTGGAGTTAATTTTCCCATTGTTCTACAGGGAAAAAAACTGTTGGGTGAGTTTCCAGATCTGTGCTTCTTTGCACTGGCATCCTATCTGGTCAAAAGGTTGTGTTTTAATAATTAAAAGTGCAAATAGTTCCTGTACTTTTATGTTGAATCATTACATAAAACGTTTTGTATACATGCGATTTATAGACTAATTGCCATTACATGGGGCCTTTGTTTCCACTAGGTTTTGTTGGAAATAATGGCGGTCAGGACCAATCTCATTTCGCTGTTAATTAATTTTGCAATGGATGTAAATCACCCACCTCTCTTCTAATGATTAATTTTGCAATGGATGTAAATCACCCACCTCTCTTGCAATGATTAATTTTGCAATGGATGTAAATCACCCACCTCCCTTCTAATGATGGGGAGCTATCATTGAATCCTATCCTTTTGTACAGATCCCTCATGCGTTATCTGAGTGCGCCAGCACTAAAATTTTTAACATTGGCCC

Ace file of the UniGene sp_v1.1_unigene2429

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic/ protein phosphatase type 2C n=2 Tax=Andropogoneae RepID=B6U7X6_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein phosphatase-	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	72%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL70

Fln msg:

Fln protein: MGSCLSTDGGGSSYGCCNGSCATSSAKKRDRRNKTSLLAAAAEAQTDAHLARIPGRMCMSGSSNIACMFTQQGRKGTNQDAMVVWEEFGSNKDTVFCGVFDGHGPYGHLVAKRVRDSLPSKLCSHWEAITRGDEGNSNIREAGTAVGSINSDETASITMDEEWKEADGEDTESLEEKAPDMLTAWKESFLKAFKVMDKELRFHPTIDCFCSGTTAVTLLKQGEDLVMANVGDSRAVLGTRDDDNSLKAVQLTVDLKPNLPKEAERIKQFKGRVFALQDEPDVARVWLPHDDSPGLAMARAFGDFCLKDFGLIAVPDISYRRLTESDEFIVLATDGVWDVLSNKEVVDIVASAPTQATAARSLVEFAVRAWRLKYPTSKVDDCAVVCLFLSGLPSISEAKASKDTVTSKEQPCPKEAIPGPVTTLSEGTIKTDECPADGEENSPRLGRLNTVRNNVNDVVKNRSEAVSEIIETSTTDLLKHPERSQSRRSLAECLSVTDEDEWSALEGVSRVNSLLNLPRFLTGERMSGGLRKRH*

Protein Length: 536

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTTAACCAGACTTTGGCTGTCGTGCTATTGCTTCTTCTGTACATCTTTATCTGTTTGTTTCTACAGTGCCGAGTCTGTCTCTGTCAAAGAGCAATGGTGTATTGGATGGGATTGGATTCTGAAAGTTGCGAGGTTCGAACTTATCACCCCTGGTCAACAAGAACTTCCAGTCCATTGTCTGTCAGTTTGTTGGATGGTTTCTTAAGTAGTAGGTAGGTAGTTGAGACGTGGTTGGAAGAAATGTCTGGCGGCCATTGCTGATCGAGCGGAGGAGCAGGGGGAAAGTGAAGAAGGAAAAGAATAAATCTTTCGTGGTGGAGTGTTTATTGGAGATCATCAGGGCCCTGAGA_-_ATGGGGTCCTGTCTTTCTACGGATGGAGGAGGTTCCTCGTATGGGTGCTGCAATGGTTCGTGTGCGACTTCCAGTGCTAAGAAGAGGGACAGGAGGAACAAAACTTCCCTTCTAGCTGCGGCTGCTGAGGCTCAAACTGATGCCCATTTGGCCAGGATTCCTGGCAGGATGTGTATGAGTGGGTCAAGTAATATTGCATGTATGTTTACTCAGCAGGGTAGAAAGGGGACTAATCAGGATGCCATGGTTGTTTGGGAGGAATTTGGGTCGAACAAGGACACTGTGTTCTGCGGAGTATTCGATGGGCATGGGCCTTATGGTCACTTGGTTGCGAAAAGAGTCAGGGACTCGCTGCCCTCGAAGCTGTGTTCCCATTGGGAAGCCATAACCAGAGGCGATGAGGGCAATAGCAATATACGAGAAGCTGGTACTGCAGTGGGAAGCATCAATTCGGATGAAACAGCTTCTATAACCATGGATGAGGAATGGAAAGAAGCCGATGGAGAGGACACAGAGAGCCTTGAGGAGAAAGCCCCTGATATGCTCACTGCGTGGAAAGAATCCTTTCTCAAAGCCTTTAAAGTTATGGATAAGGAGCTCAGGTTTCATCCCACAATTGATTGCTTCTGCAGCGGAACCACCGCTGTGACTCTTTTAAAGCAGGGAGAAGACCTGGTGATGGCTAACGTAGGAGACTCGCGCGCAGTTCTGGGCACGAGAGATGATGATAATTCCCTGAAAGCAGTGCAGTTGACTGTGGATTTGAAGCCCAATCTACCAAAGGAAGCTGAGAGGATTAAACAATTCAAAGGACGGGTTTTTGCACTGCAAGATGAACCTGACGTGGCACGGGTGTGGTTACCCCATGACGACTCTCCTGGTCTGGCAATGGCAAGAGCATTTGGAGATTTCTGTCTAAAGGATTTCGGTCTCATTGCTGTGCCTGATATTTCGTACCGTCGTCTCACAGAAAGCGACGAGTTCATTGTACTGGCTACTGATGGGGTATGGGATGTGCTGTCTAACAAGGAAGTGGTAGATATTGTGGCATCAGCTCCTACTCAAGCAACTGCAGCCAGATCTTTAGTTGAATTCGCTGTTCGAGCATGGAGACTGAAATACCCAACTTCCAAAGTAGATGATTGTGCAGTAGTATGCCTTTTTCTCAGTGGTCTTCCTTCAATTTCTGAGGCAAAAGCAAGTAAGGATACGGTGACCTCAAAAGAACAACCTTGCCCTAAAGAGGCTATTCCAGGGCCAGTCACTACACTGTCAGAAGGAACAATAAAAACAGATGAGTGCCCTGCAGATGGAGAGGAAAATAGTCCTAGATTAGGCCGTCTAAATACTGTAAGAAATAATGTGAATGATGTTGTCAAAAATCGATCAGAAGCAGTTTCAGAAATAATTGAAACATCCACCACAGATTTACTGAAGCACCCAGAGAGGTCTCAATCCCGTAGAAGCCTTGCTGAATGTCTCTCTGTGACTGATGAGGATGAATGGTCTGCACTAGAAGGTGTTAGTAGAGTGAACTCGCTTCTGAATCTTCCGAGGTTTTTGACGGGAGAAAGAATGTCCGGAGGTTTGAGGAAGCGGCATTGA___TTGATTAGTGAAGTCATTCAGTTTCAAGTGCTGCAACAATTTGTTATATTACATTATTTCAAGCTCCAGCCTCCCGCAGGATATAGTTGAATACCTGGGAGGGAGGTGATTCTGTAACAATATCTGTTGATTTGCTGAAGGCATTTTGAAGCCATGCAAATTCGTAAACACGTGATGTCTAAACTCGGGTTTCAAGGTTCTATTCCTTTAATGTTGAAGGAAGGAACTGGATATGGATTCCTGTTATGTTGTCGCTCTCGTACATAAAAGCAAATTTCAAGGTTCAATTCCTTTAATGTTGAAGGAAGGAACTGGATATGGATTCTTGTTATGTTGTCACTCTCGCACAGCAAATGCAAAGGGAAGAGTTAAGCAGAAGACCTCTGAGGGCAGGACAATCAGATTTGTCTTCATTGGCTTTAACAGAAAACTGGCATGCCTATGGGGTTGTGGCAGATACAGTAAAATATATCCTGGGCTAATTTTTGGACTAAGCCTATTGTGGTAGTATCAGATTCAGTTTAAAGAAATGTCTTGGGTTAAATTTTGGAGTTAATTTTCCCATTGTTCTACAGGGAAAAAAACTGTTGGGTGAGTTTCCAGATCTGTGCTTCTTTGCACTGGCATCCTATCTGGTCAAAAGGTTGTGTTTTAATAATTAAAAGTGCAAATAGTTCCTGTACTTTTATGTTGAATCATTACATAAAACGTTTTGTATACATGCGATTTATAGACTAATTGCCATTACATGGGGCCTTTGTTTCCACTAGGTTTTGTTGGAAATAATGGCGGTCAGGACCAATCTCATTTCGCTGTTAATTAATTTTGCAATGGATGTAAATCACCCACCTCTCTTCTAATGATTAATTTTGCAATGGATGTAAATCACCCACCTCTCTTGCAATGATTAATTTTGCAATGGATGTAAATCACCCACCTCCCTTCTAATGATGGGGAGCTATCATTGAATCCTATCCTTTTGTACAGATCCCTCATGCGTTATCTGAGTGCGCCAGCACTAAAATTTTTAACATTGGCCC

Fln Alignment:

sp_v1.1_unigene2429___MGSCLSTDXXXXXXXXXXXXXATSSAKKRDRRNKTSXXXXXXXXXXXXXXXRIPGRMCMSGSSNIACMFTQQGRKGTNQDAMVVWEEFGSNKDTVFCGVFDGHGPYGHLVAKRVRDSLPSKLCSHWEAITRGDEGNSNIREAGTAVGSINSDETASITMDEEWKEADGEDTESLEEKAPDMLTAWKESFLKAFKVMDKELRFHPTIDCFCSGTTAVTLLKQGEDLVMANVGDSRAVLGTRDDDNSLKAVQLTVDLKPNLPKEAERIKQFKGRVFALQDEPDVARVWLPHDDSPGLAMARAFGDFCLKDFGLIAVPDISYRRLTESDEFIVLATDGVWDVLSNKEVVDIVASAPTQATAARSLVEFAVRAWRLKYPTSKVDDCAVVCLFLSGLPSISEAKASKDTVTSKEQPCPKEAIPGPVTTLSEGTIKTDECPADGEENSPRLGXXXXXXXXXXXXXXXXSEAVSEIIETSTTDLLKHPERSQSRRSLAECLSVTDEDEWSALEGVSRVNSLLNLPRFLTGERMSGGLRKRH
B8LL70______________MGSCLSTDGGGSSHGCCSIPCAPSSAKKRDKKNKTSLQAAAAEAQTDAHLARIPGRMCMNGSSDIACMFTQQGRKGTNQDAMVVWEEFGSNKDTVFCGVFDGHGPFGHLVAKRVRDSLPSKLCSHWEAITRGDEGNNNIREAVSAVGSLNSDETASITMDEEWKEAEGEDTEGLTGKAPDMLTAWKESFLKAFKVMDKELRFHPTIDCFCSGTTAVTLLKQGEDLVMGNVGDSRAILGTRDNDNSLIAVQLTVDLKPNLPKEAERIKQFKGRVFALSDEPDVARVWLPHDDSPGLAMARAFGDFCLKDFGLIAVPDISYRRLTQRDEFIVLATDGVWDVLSNKEVVDIVASAPTQATAARSLVEFAVRAWRLKYPTSKVDDCAVVCLFLSDLPSISVAKANRDMMALKEPPFPKEAIPAP-----------DECPADGEASSPRLGRLNTVRNNVNDVAKNRSEAVPEIVETSTTDLLKQPERSQSRRSLADCLSVADEDEWSALEGVSRVNTLLNLPRFLTGDRMSGGLRKRH

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
459	22		77		0.999999
475	88	11			0.923564
476	88		11		0.923564
479	87			12	0.992554
480	87		12		0.992554
482		87	12		0.992554
484			12	87	0.992554
485	12	87			0.992554
487	12	87			0.992554
488			12	87	0.992554
489			12	87	0.992554
491		11		88	0.923564
497	11	88			0.923564
499	11		88		0.923564
534			87	12	0.992554
1038	66		33		0.997452
1533	88		11		0.923564
1536		88		11	0.923564
1646		90	10		0.90298
1648		90		10	0.90298
1665	70		20		0.999998
1683	40			60	1.0
1770	87		12		0.992554
1772		87	12		0.992554
1822	20		80		0.995493
1980	10			90	0.90298
1984			10	90	0.90298
1985			10	90	0.90298
2004			90	10	0.90298
2019	90			10	0.90298
2088			87	12	0.992554
2188		14		85	0.993533
2342	87		12		0.999964
2343	86		13		0.999973
2650	33		66		0.997452
2651		66		33	0.997452
2652	66		33		0.997452
2653	66		33		0.997452
2654	66		33		0.997452
2732	75		25		0.996473
2734		25	25		0.995533
2736			75	25	0.996473
2738	25		75		0.996473
2743			25	75	0.996473
2745		25		75	0.996473
2747			25	75	0.996473
2748		75		25	0.996473
2755		25	75		0.996473
2756	25			75	0.996473
2888		25	75		0.996473
2889		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain