SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2415

Length: 2449 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene2415
TGTAAGTTGGTTAGGCCTCTTTTTTTTTAATTGCTGGGTTTTCTTTTGTGGCCGTAATTTATGACAGGAATCTTTGAGTAGGCAAACCAGAAATTAGTGTACAAAAAAGCTCATTTAATGGCAAGGACGCTACCCATCTGTATAAAATGGTTCATTTAGTGGCAAGAACGCTCCCCATCTGTATTCGAAATTCTTTCAGATCATCCTGTAGGACGGGTATTTCTTAAAAGGGGCCATAGAAATTAAAGAAAATTTTGTGCCCATTTGATACATTTTGGCCGGGCTATGTGACAAGCTAAATCGAGTAGTCTGCTAGCAAATGACGAGTAGGAGCAGACGACTGGAGGAAACTGACATCTCGACAGTGTCAGTTTATTCTGTGTCCCCTATTTCTCCTTATCCGTTTTCATCAAATAAGAGTATTAATGATTCTTCCTCTTCTGAGAATCCTTATAGCAATCCATACGACATCAGTGCCCGTTTCAATCCATCCATGGCCATTATCATAGTTGTTCTGCTGAGTGCCTTTTTCTTCATGGGTTTTTTTCTCAATCTATGTCCGTCGTTGCACCAGCGACGAAGACACAGGGGGTAACTCTCGAAGAGGAGGTAGTGGGCACAGGAGGATGAACAGGTCTTCTCAAGGTCTTGACACAAGCCTGATTGAGAGCTTTCCCCTGTTCCGTTATTCTTTGGTGAAAGGGTTGAAGCTTGGAAAGGGGTCAATGGAATGTGTAGTTTGTTTGAGTGAATTTCAGGAGGATGAAACACTGAGGTTACTGCCTAAATGTGGCCATGCATTTCATCCTGACTGCATTGATATGTGGCTCTTTTCACACACTACATGCCCTTTATGTCGATCTAGTCTTCTTTCCCAATTCAATGATGTAACCATGGAAGCCCAGCCCCAGCCTCAGCCTCAGAGGGGACTGTCACAGGCAGCCGAGCAAGTAGTAATTGTTGTTGGGCCCCAAGATACAGTTGATCACAATGGCAGAGGCACCATTGAATTGAATCCACTTGGTGGGCTATCTATGACAAGTCCAGGCCAAGCCATAGCCAATCCATCTGCTACAAATTCCTCCATTTTAGGAATTGTCAATAACTTGAGGTCTCTAGAGAGCCGAAGTCAGACTTTTAGCCGTTCCCATTCAACGGGCCATTCGTTGGTTAGGCTTACAGGAGATCCTGATCATCCTTCTGAATTCTATATTTCGACCGATGATAGATATGTTCTGGATTTCCCTGGAGGTCTTGTTGAATCATCATCGGCCACGGCTGGCTTGCATAGAAGCAGCAGCTGTGCAGAGTTTCCTCATCCGGGGCCACAGGACTTGTCAAATTCAAACGACCTAGAGAGGCTCTGGAAGCATCCTTCATCCACAGAGGGCCATGGGTTAGAAGAAATATATGCTCGCTTGCGTCGAGGATCAGAGATCGAAAGTGATCAAGAATTTTCTGCAAGCATTTCACAGAGTCATTTCGATCCAAGGATTAGATCGGACAGATGGAACATGATGTCTCTGCGTTCCCCTTTCTTCTTCAGGACTTTCTCGGAGAATACAGGTCCTTACTTTCAAGAGCAACAGGTACCCATTCCTTCTACATCCCAGGAGAGCGTTCCACAAGACCGCAAAGATATTTTACAGTCTTTGAAAAACAGTTTAAAATGGCTCAAAGGAATAGACAGGAGAATGGTTTCAAATAATGGACCAGAGGCCTCCAGTGTGACTGAACAAGGTGGGTCACTTCCATATAATGTTCTCAGACTTCATTGATCTGGGAGCTGAACAACTGCATTTAGAGTGTTTCAATTGCATGTTGAAGTATATAAAATAGTTGAGAAAGCAGATAATTTTCATCTCATGCATCAGATACTGGGTAGGTGAATTGTACACTGACAAGCTCTAGAAAGCACCAGAAGAATCAAGATGAGAGAAATAGATTGATTTTTCACACATCAGAAATGGGTTACGCAAGAAAGGGAGTGACAACCCAAGCCAGAATGTTCGCTTCTATAGCACTTATCAATTAAAATCTCATTTCTCCTCATGACTTACTTCCCAAACCATGGCGAAAATGTGGTGCCTAATAACTTCAGAGTTATGTTTCAGAAGCTTAACTTCACCAACTCAAAATCAAAATTGAATTTCATAGATTTCAGGAGTTTGAAGATTTAAACATGAGTGGTACTTCAGTGTATATTCTTTGATGACAAGCAACTTCAGAACATTGTATGGGAGGACTGCAGTTAAATTTGTTCAAGAAGCATTATTTTTTCAATCAAAATTATTAATGTCAGCAGGGGAGCCAGAAGGGTAGAATGTCCTCTGCATTTCCCCTTTCTGTACATGGTAATCATCTTCTTATTGTAAATGTTTGAGGGTTTCTGGCAACATAAATGTCGCTATGTATTCGTTTCGTATAATCAATCTTGAATTTCATAGAT

Ace file of the UniGene sp_v1.1_unigene2415

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RF24_RICCO	-	-	4.99983e-42	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	48%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	48%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	48%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN45

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 368 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 92 - 466

Fln protein: MTSRSRRLEETDISTVSVYSVSPISPYPFSSNKSINDSSSSENPYSNPYDISARFNPSMAIIIVVLLSAFFFMGFFLNLCPSLHQRRRHRG*

Protein Length: 93

Fln nts: TGTAAGTTGGTTAGGCCTCTTTTTTTTTAATTGCTGGGTTTTCTTTTGTGGCCGTAATTTATGACAGGAATCTTTGAGTAGGCAAACCAGAAATTAGTGTACAAAAAAGCTCATTTAATGGCAAGGACGCTACCCATCTGTATAAAATGGTTCATTTAGTGGCAAGAACGCTCCCCATCTGTATTCGAAATTCTTTCAGATCATCCTGTAGGACGGGTATTTCTTAAAAGGGGCCATAGAAATTAAAGAAAATTTTGTGCCCATTTGATACATTTTGGCCGGGCTATGTGACAAGCTAAATCGAGTAGTCTGCTAGCAA_-_ATGACGAGTAGGAGCAGACGACTGGAGGAAACTGACATCTCGACAGTGTCAGTTTATTCTGTGTCCCCTATTTCTCCTTATCCGTTTTCATCAAATAAGAGTATTAATGATTCTTCCTCTTCTGAGAATCCTTATAGCAATCCATACGACATCAGTGCCCGTTTCAATCCATCCATGGCCATTATCATAGTTGTTCTGCTGAGTGCCTTTTTCTTCATGGGTTTTTTTCTCAATCTATGTCCGTCGTTGCACCAGCGACGAAGACACAGGGGGTAACTCTCGAAGAGGAGGTAGTGGGCACAGGAGGATGAACAGGTCTTCTCAAGGTCTTGACACAAGCCTGATTGAGAGCTTTCCCCTGTTCCGTTATTCTTTGGTGAAAGGGTTGAAGCTTGGAAAGGGGTCAATGGAATGTGTAGTTTGTTTGAGTGAATTTCAGGAGGATGAAACACTGAGGTTACTGCCTAAATGTGGCCATGCATTTCATCCTGACTGCATTGATATGTGGCTCTTTTCACACACTACATGCCCTTTATGTCGATCTAGTCTTCTTTCCCAATTCAATGATGTAACCATGGAAGCCCAGCCCCAGCCTCAGCCTCAGAGGGGACTGTCACAGGCAGCCGAGCAAGTAGTAATTGTTGTTGGGCCCCAAGATACAGTTGATCACAATGGCAGAGGCACCATTGAATTGAATCCACTTGGTGGGCTATCTATGACAAGTCCAGGCCAAGCCATAGCCAATCCATCTGCTACAAATTCCTCCATTTTAGGAATTGTCAATAACTTGAGGTCTCTAGAGAGCCGAAGTCAGACTTTTAGCCGTTCCCATTCAACGGGCCATTCGTTGGTTAGGCTTACAGGAGATCCTGATCATCCTTCTGAATTCTATATTTCGACCGATGATAGATATGTTCTGGATTTCCCTGGAGGTCTTGTTGAATCATCATCGGCCACGGCTGGCTTGCATAGAAGCAGCAGCTGTGCAGAGTTTCCTCATCCGGGGCCACAGGACTTGTCAAATTCAAACGACCTAGAGAGGCTCTGGAAGCATCCTTCATCCACAGAGGGCCATGGGTTAGAAGAAATATATGCTCGCTTGCGTCGAGGATCAGAGATCGAAAGTGATCAAGAATTTTCTGCAAGCATTTCACAGAGTCATTTCGATCCAAGGATTAGATCGGACAGATGGAACATGATGTCTCTGCGTTCCCCTTTCTTCTTCAGGACTTTCTCGGAGAATACAGGTCCTTACTTTCAAGAGCAACAGGTACCCATTCCTTCTACATCCCAGGAGAGCGTTCCACAAGACCGCAAAGATATTTTACAGTCTTTGAAAAACAGTTTAAAATGGCTCAAAGGAATAGACAGGAGAATGGTTTCAAATAATGGACCAGAGGCCTCCAGTGTGACTGAACAAGGTGGGTCACTTCCATATAATGTTCTCAGACTTCATTGATCTGGGAGCTGAACAACTGCATTTAGAGTGTTTCAATTGCATGTTGAAGTATATAAAATAGTTGAGAAAGCAGATAATTTTCATCTCATGCATCAGATACTGGGTAGGTGAATTGTACACTGACAAGCTCTAGAAAGCACCAGAAGAATCAAGATGAGAGAAATAGATTGATTTTTCACACATCAGAAATGGGTTACGCAAGAAAGGGAGTGACAACCCAAGCCAGAATGTTCGCTTCTATAGCACTTATCAATTAAAATCTCATTTCTCCTCATGACTTACTTCCCAAACCATGGCGAAAATGTGGTGCCTAATAACTTCAGAGTTATGTTTCAGAAGCTTAACTTCACCAACTCAAAATCAAAATTGAATTTCATAGATTTCAGGAGTTTGAAGATTTAAACATGAGTGGTACTTCAGTGTATATTCTTTGATGACAAGCAACTTCAGAACATTGTATGGGAGGACTGCAGTTAAATTTGTTCAAGAAGCATTATTTTTTCAATCAAAATTATTAATGTCAGCAGGGGAGCCAGAAGGGTAGAATGTCCTCTGCATTTCCCCTTTCTGTACATGGTAATCATCTTCTTATTGTAAATGTTTGAGGGTTTCTGGCAACATAAATGTCGCTATGTATTCGTTTCGTATAATCAATCTTGAATTTCATAGAT

Fln Alignment:

sp_v1.1_unigene2415___PYD-ISARFNPSMAIIIVVLLSAFFFMGFF
B8LN45______________PYGGLNNRFNPSMAIIIVVLLSAFFFMGFF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1985		90	10		0.90298
1987		90	10		0.90298
1992	90			10	0.90298
1993	90		10		0.90298
2017		40		60	1.0
2037	70		30		1.0
2127	12		87		0.992554
2212	60	40			1.0
2220		40		60	1.0
2248		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain