SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2405

Length: 2983 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2405
ATGGGGAACAGTGAAAGTAGAAAGGGAATTTGCAGGACGAGGAGGAATACTTGCAGGTGAAGAAGGGTATCGCACGTCACTTTTTCTGGGAGTTGAATTGTTGGCTCAGTAGATCTGCGCCTTCGTTAATTTAGTAGGGAAACGGCAAGCCTTTTGCCCAATATTCACAGTGCCATTTTTTGGGCGAAGAAGAGAGGATTTCACGGTGGCGTCTTTTGATCCCCATATTTCGATATTCAAAGATCTGTTTCCGAAAAAAATTGAGGATTTGTGGTTCCTTTTGGTATTTTCCGGAAACTGGGAGAATTGCAGTGGCATTTTTGGCAAAGCTTTGACGATTGAGATGTGCATCTTCGTTAAGACCATGCATATCTTTCGGTTCTGTTTGGCTTTGTTCAAATATTATTGAGTGATTCAAGCCATTGGTGATAATAGCATTTGCTTGAAATTCTTGGCCTTATTTCTTGTTGGTTTTCCCGTCTGCCTGTCATGGGAATCTGCTATGGGAAAGTGGCGGTACCGGAAGTTCCTATACCACAACCACAAGAACAGGAAAACAATGGAGGCGCTTCTAATGAGGATGACAAATGTAGGATCGGTGAATCCCCTTCTGTTGACGGAATCAGCAAACCCTCTCCGTTTCCATTCTATAGCCCTAGCCCCGCAAACAGTAATTTCCGCAATTCGCCAGCAAATTCGACTCCTCGGCGTTTTTTCAAGCGGCCGTTCCCTCCTCCGTCCCCTGCAAAACATATCAAGGCTGCTCTTGCGAGACGGCAAGGGGCTGTAAAGCCCAACGAAGTTACGATTCCTGAAGGGAGCGAGAGCGAAGAAGTCGTTCTGGATAAAAGCTTTGGCTTCAGCAAGAATTTCTCGTCAAAGTACGATCTCGGCTACGAGGTCGGGCGTGGACATTTTGGGCACACTTGCTTTGCAAAGTCCCGGAAAGGAGACCTGAAGGGCCAGTCTGTCGCCGTCAAGATCATATCCAAGGCCAAGATGACCACAGCCATTGCCATTGAGGATGTTAGGCGGGAGGTAAAAATTCTCAGAGCATTGACAGGACACCATAACTTGGTGAAATTTCATGAAGCATATGAAGACAATTCAAATGTATATATAGTAATGGAGTTATGTGAGGGCGGTGAGCTGCTAGAACGGATTCTCTCGAGAGGAGGAAAGTATTCAGAAGATGATGCAAAAGCTGTTGTTGTTCAAATTTTAAATGTTGTAGCTTTTTGTCATCTTCAGGGTGTGGTTCATAGAGATCTCAAGCCAGAGAATTTCCTATTCACTAGCAAGGATGAACATGCTGAGTTGAAGGCTATAGATTTTGGCTTGTCAGACTTTGTTAAGCCAGATGAAAGACTAAATGATATTGTAGGTAGTGCATACTATGTTGCACCAGAAGTTCTCCACAGGTCTTATGGCACAGAAGCAGATGTGTGGAGCATCGGTGTTATTGTATACATCCTTATTTGTGGTAGCCGGCCTTTCTGGGCTCGAACTGAGTCTGGTATATTTCGAGCTGTTTTGAAGGCCGATCCAAGTTTTGAGGAAGCTCCTTGGCCTGCTGTGTCTTCTGAAGCGAAAGACTTTGTCAAACGTTTGCTTAACAAGGATATGCGTAAAAGAATGACTGCTTCGCAGGCTCTCACGCACCCCTGGATTAAAAATTCTCACAATCTCAAGGTTCCTTTGGACATTCTAATCTATCGTCTTGTGCGGGCATATCTACGTGCATCAAGTCTTCGAAGAGCAGCACTAAAGGCTTTGGCAAAGACACTTACTGTGGATGAATTGTTCTATCTGCGGGAACAATTTGCATTGTTGGAACCAAATAAAAATGGTCACGTTTCTCTGGAAAACTTCAGAATGGCTTTGGTGAAACATGCAACAGAAGCAATGAAGGAATCACGCATCTATGATTTGCTTTCTTCGATGAGTTCTCTACAATCGAGGAAAATGGATTTTGAAGAATTCTGTGCTGCTGCTATAAGTGTTCACCAGCTTGAAGCACTGGATCGATGGGAGCAGCATGCTCGATGTGCATATGAACTGTTTGAACAGAAAGGGAATCGGCCAATTGTTATTGAAGAACTAGCCTCGGAACTTGGAATAGGGCCGGCTGTCCCAGTGCATGCGGTGCTTCATGACTGGATAAGGCATAGTGATGGAAAATTAAGTTTTCTGGGATTTGTGAAAATACTACATGGTGTGTCAACAAGATCATTGACAAGGGCACAATAATACTTGTCTGTGCATGAGCACTGTCCCTGTATTTCAAATTAAGGTGAAGAAATGTGCTAGTTCTGATTACCTGCCTTTGTAGCCTTTTCTTTTCCAAGGTTGCAATTATTTATTCTTGCCTTGAAAGGACTTAATGACAGACATCCCAAATCTCAAGGATCACAATATTCTCCTGGGGAGTATAATTTTCCTGAAGATGATAGTCTAATGGGGTTTGGGATGTAGTTTACAGGGAGGAGTCTTATACTTGTATAGTAAGTCCCAGATGTGGCCTGTGCAGACCATGCTGGTCTGTGCATTGTATTTCTTAATTCATTTGCCATATAATGGGAAGAAAATAGTGGATTCTCCTTTGCAACAGTGTGTTCAACCTGGATCCTTTTTAAATAGTATTGCGTATCACAACATGTGTCTTTTTGGAGCTACATTCTTTATGTAATTTAGAAGCACATGTTAACGGTGGACTGGGGGACATGCAGACAACTTGATGATGTTACCAGTCAAACAACTATCTTTTACTGTGCTTTGTCTTATCATCTCGAGGAAAAAACTTTTGGTGGCCATGGGGACCATGTCTAGATGGTTTAGCAGAGTAGGGAGCTGGAAGGAGAGGCTATATTCAGTTTGCACCATACTGTGTTTGATTATGCAGAATTTAATACCTCAAACATGACATTTTTCTGTTAATGGAATAGCATTTCCAAGCGTGTTTTCCACTGCAAATTCACAGCAA

Ace file of the UniGene sp_v1.1_unigene2405

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium/calmodulin-dependent protein kinase CaMK3 n=1 Tax=Nicotiana tabacum RepID=Q8W559_TOBAC	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	cdpk-related protein kinase	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	91%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	91%
Blast2go	actin filament polymerization	GO:0030041	Biological Process	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	kinase activity	GO:0016301	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	91%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	91%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	91%
Blast2go	Protein kinase-like domain	IPR011009	-	91%
Blast2go	EF-hand-like domain	IPR011992	-	91%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	91%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	91%
Blast2go	EF-HAND 2	IPR018249	-	91%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM8

Fln msg:

Fln protein: MGICYGKVAVPEVPIPQPQEQENNGGASNEDDKCRIGESPSVDGISKPSPFPFYSPSPANSNFRNSPANSTPRRFFKRPFPPPSPAKHIKAALARRQGAVKPNEVTIPEGSESEEVVLDKSFGFSKNFSSKYDLGYEVGRGHFGHTCFAKSRKGDLKGQSVAVKIISKAKMTTAIAIEDVRREVKILRALTGHHNLVKFHEAYEDNSNVYIVMELCEGGELLERILSRGGKYSEDDAKAVVVQILNVVAFCHLQGVVHRDLKPENFLFTSKDEHAELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADVWSIGVIVYILICGSRPFWARTESGIFRAVLKADPSFEEAPWPAVSSEAKDFVKRLLNKDMRKRMTASQALTHPWIKNSHNLKVPLDILIYRLVRAYLRASSLRRAALKALAKTLTVDELFYLREQFALLEPNKNGHVSLENFRMALVKHATEAMKESRIYDLLSSMSSLQSRKMDFEEFCAAAISVHQLEALDRWEQHARCAYELFEQKGNRPIVIEELASELGIGPAVPVHAVLHDWIRHSDGKLSFLGFVKILHGVSTRSLTRAQ*

Protein Length: 588

Fln nts: ATGGGGAACAGTGAAAGTAGAAAGGGAATTTGCAGGACGAGGAGGAATACTTGCAGGTGAAGAAGGGTATCGCACGTCACTTTTTCTGGGAGTTGAATTGTTGGCTCAGTAGATCTGCGCCTTCGTTAATTTAGTAGGGAAACGGCAAGCCTTTTGCCCAATATTCACAGTGCCATTTTTTGGGCGAAGAAGAGAGGATTTCACGGTGGCGTCTTTTGATCCCCATATTTCGATATTCAAAGATCTGTTTCCGAAAAAAATTGAGGATTTGTGGTTCCTTTTGGTATTTTCCGGAAACTGGGAGAATTGCAGTGGCATTTTTGGCAAAGCTTTGACGATTGAGATGTGCATCTTCGTTAAGACCATGCATATCTTTCGGTTCTGTTTGGCTTTGTTCAAATATTATTGAGTGATTCAAGCCATTGGTGATAATAGCATTTGCTTGAAATTCTTGGCCTTATTTCTTGTTGGTTTTCCCGTCTGCCTGTC_-_ATGGGAATCTGCTATGGGAAAGTGGCGGTACCGGAAGTTCCTATACCACAACCACAAGAACAGGAAAACAATGGAGGCGCTTCTAATGAGGATGACAAATGTAGGATCGGTGAATCCCCTTCTGTTGACGGAATCAGCAAACCCTCTCCGTTTCCATTCTATAGCCCTAGCCCCGCAAACAGTAATTTCCGCAATTCGCCAGCAAATTCGACTCCTCGGCGTTTTTTCAAGCGGCCGTTCCCTCCTCCGTCCCCTGCAAAACATATCAAGGCTGCTCTTGCGAGACGGCAAGGGGCTGTAAAGCCCAACGAAGTTACGATTCCTGAAGGGAGCGAGAGCGAAGAAGTCGTTCTGGATAAAAGCTTTGGCTTCAGCAAGAATTTCTCGTCAAAGTACGATCTCGGCTACGAGGTCGGGCGTGGACATTTTGGGCACACTTGCTTTGCAAAGTCCCGGAAAGGAGACCTGAAGGGCCAGTCTGTCGCCGTCAAGATCATATCCAAGGCCAAGATGACCACAGCCATTGCCATTGAGGATGTTAGGCGGGAGGTAAAAATTCTCAGAGCATTGACAGGACACCATAACTTGGTGAAATTTCATGAAGCATATGAAGACAATTCAAATGTATATATAGTAATGGAGTTATGTGAGGGCGGTGAGCTGCTAGAACGGATTCTCTCGAGAGGAGGAAAGTATTCAGAAGATGATGCAAAAGCTGTTGTTGTTCAAATTTTAAATGTTGTAGCTTTTTGTCATCTTCAGGGTGTGGTTCATAGAGATCTCAAGCCAGAGAATTTCCTATTCACTAGCAAGGATGAACATGCTGAGTTGAAGGCTATAGATTTTGGCTTGTCAGACTTTGTTAAGCCAGATGAAAGACTAAATGATATTGTAGGTAGTGCATACTATGTTGCACCAGAAGTTCTCCACAGGTCTTATGGCACAGAAGCAGATGTGTGGAGCATCGGTGTTATTGTATACATCCTTATTTGTGGTAGCCGGCCTTTCTGGGCTCGAACTGAGTCTGGTATATTTCGAGCTGTTTTGAAGGCCGATCCAAGTTTTGAGGAAGCTCCTTGGCCTGCTGTGTCTTCTGAAGCGAAAGACTTTGTCAAACGTTTGCTTAACAAGGATATGCGTAAAAGAATGACTGCTTCGCAGGCTCTCACGCACCCCTGGATTAAAAATTCTCACAATCTCAAGGTTCCTTTGGACATTCTAATCTATCGTCTTGTGCGGGCATATCTACGTGCATCAAGTCTTCGAAGAGCAGCACTAAAGGCTTTGGCAAAGACACTTACTGTGGATGAATTGTTCTATCTGCGGGAACAATTTGCATTGTTGGAACCAAATAAAAATGGTCACGTTTCTCTGGAAAACTTCAGAATGGCTTTGGTGAAACATGCAACAGAAGCAATGAAGGAATCACGCATCTATGATTTGCTTTCTTCGATGAGTTCTCTACAATCGAGGAAAATGGATTTTGAAGAATTCTGTGCTGCTGCTATAAGTGTTCACCAGCTTGAAGCACTGGATCGATGGGAGCAGCATGCTCGATGTGCATATGAACTGTTTGAACAGAAAGGGAATCGGCCAATTGTTATTGAAGAACTAGCCTCGGAACTTGGAATAGGGCCGGCTGTCCCAGTGCATGCGGTGCTTCATGACTGGATAAGGCATAGTGATGGAAAATTAAGTTTTCTGGGATTTGTGAAAATACTACATGGTGTGTCAACAAGATCATTGACAAGGGCACAATAA___TACTTGTCTGTGCATGAGCACTGTCCCTGTATTTCAAATTAAGGTGAAGAAATGTGCTAGTTCTGATTACCTGCCTTTGTAGCCTTTTCTTTTCCAAGGTTGCAATTATTTATTCTTGCCTTGAAAGGACTTAATGACAGACATCCCAAATCTCAAGGATCACAATATTCTCCTGGGGAGTATAATTTTCCTGAAGATGATAGTCTAATGGGGTTTGGGATGTAGTTTACAGGGAGGAGTCTTATACTTGTATAGTAAGTCCCAGATGTGGCCTGTGCAGACCATGCTGGTCTGTGCATTGTATTTCTTAATTCATTTGCCATATAATGGGAAGAAAATAGTGGATTCTCCTTTGCAACAGTGTGTTCAACCTGGATCCTTTTTAAATAGTATTGCGTATCACAACATGTGTCTTTTTGGAGCTACATTCTTTATGTAATTTAGAAGCACATGTTAACGGTGGACTGGGGGACATGCAGACAACTTGATGATGTTACCAGTCAAACAACTATCTTTTACTGTGCTTTGTCTTATCATCTCGAGGAAAAAACTTTTGGTGGCCATGGGGACCATGTCTAGATGGTTTAGCAGAGTAGGGAGCTGGAAGGAGAGGCTATATTCAGTTTGCACCATACTGTGTTTGATTATGCAGAATTTAATACCTCAAACATGACATTTTTCTGTTAATGGAATAGCATTTCCAAGCGTGTTTTCCACTGCAAATTCACAGCAA

Fln Alignment:

sp_v1.1_unigene2405___SPANSTXXXXXXXXXXXXXXAKHIKAALARRQGAVKPNEVTIPEGSESEEVVLDXXXXXXXXXXXXYDLGYEVGRGHFGHTCFAKSRKGDLKGQSVAVKIISKAKMTTAIAIEDVRREVKILRALTGHHNLVKFHEAYEDNSNVYIVMELCEGGELLERILSRGGKYSEDDAKAVVVQILNVVAFCHLQGVVHRDLKPENFLFTSKDEHAELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADVWSIGVIVYILICGSRPFWARTESGIFRAVLKADPSFEEAPWPAVSSEAKDFVKRLLNKDMRKRMTASQALTHPWIKNSHNLKVPLDILIYXXXXXXXXXXXXXXXXXXXXXXXXXXDELFYLREQFALLEPNKNGHVSLENFRMALVKHATEAMKESRIYDLLSSMSSLQSRKMDFEEFCAAAISVHQLEALDRWEQHARCAYELFEQKGNRPIVIEELASELGIGPAVPVHAVLHDWIRHSDGKLSFLGFVKILHGVSTRSLTRAQ
A9NWM8______________SPARSTPRRFFRRPFPPPSPAKHIKASLAKRQGAPKPKDGPIPEDGVENERPLDKSFGYSKNFASKYELGHEVGRGHFGHTCFAKARKGDLKGQPVAVKIISKAKMTTAIAIEDVRREVKILKALSGHHNLVKFHDACEDANNVYIIMELCEGGELLDRILSRGGKYPEEDAKVIVRQILSIVAFCHIQGVVHRDLKPENFLFTTKDEHAPMKAIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSMEADVWSVGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDAPWPSVSPEAKDFVKRLLNKDLRKRMTAAQALTHPWLRGQH--AIPLDILIFRLVKAYIRASPLKRAALKALSKSLTENELFYLRSQFKLLEPNKDGKISLENFRLALMRNATEAMKESKVPDILNTMEHLASRRMDFEEFCAAAISIYQLEAVDRWEQIASTAYEFFEQEGNKVISVEELAREMNLAPT--AHTVLHDWIRSTDGKLSFHGFTKFLHGVTVRSSTRPQ

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
68	75		25		0.996473
87	16			83	0.994512
89			16	83	0.994512
90		83	16		0.994512
91			16	83	0.994512
118		12		87	0.992554
121			87	12	0.992554
122		87	12		0.992554
125		87		12	0.992554
126			12	87	0.992554
129	12		87		0.992554
130		12		87	0.992554
132	87	12			0.992554
179		87		12	0.992554
196	87			12	0.992554
211		11	88		0.923564
214		11	88		0.923564
216		88		11	0.923564
218	11			88	0.923564
220		11		88	0.923564
223			11	88	0.923564
226	87		12		0.992554
230		87		12	0.992554
505		83	16		0.994512
506			16	83	0.994512
549		83		16	0.994512
820		11		88	0.923564
1103		10		90	0.90298
1247			20	80	0.995493
1248			80	20	0.995493
1309			75	25	0.996473
1311	75		25		0.996473
1312			25	75	0.996473
1505	12			87	0.992554
2236	88		11		0.923564
2464	80		20		1.0
2466		13	6	80	0.999961
2467		13	86		0.999973
2468			86	13	0.999973
2469			80	20	1.0
2471			13	86	0.999973
2472	6	13		80	0.999961
2475		6	80	13	0.999961
2476	6	13	80		0.999961
2601	10		89		0.999919
2928		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain