SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2403

Length: 1115 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2403 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	chloroplast unusual positioning 1b	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast relocation	GO:0009902	Biological Process	0.0	88%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	0.0	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: Overlapping hits, possible frame ERROR between 154 and 151, your sequence is shorter than subject: 252 - 314

Fln protein: VVTLAVTHVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRACAxxxIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKKLESVVASFADNPKLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNVPDKEPIREFLLLQGVRFAFRVHQFAGGFDAESMNAFENLRNRVHGQAEETDKMSSTN*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCGGAATAACATGATTGGAGAGATAGAAAACCGGTCTGCATTCCTCCTCTCTGTCAAAGCCGATGTGGAAACCCAAGGTGATTTTGTCCAGGCCTTAGCCACTGAGGTTCGAGCATGTGCCxxxxxxxxxATAGAAGATGTTGTGGCATTTGTGAACTGGTTGGATGAGGAGCTGTCTTTCTTGGTTGATGAGCGTGCTGTACTCAAACACTTTGACTGGCCTGAGAGTAAAGCTGATGCCCTGAGGGAAGCAGCCTTTGAATACCAGGATTTGAAGAAGCTGGAATCAGTAGTGGCTTCATTTGCTGACAATCCAAAACTCTCATGTGATGCTGCATTGAAAAAAATGTATTCTCTTCTTGAAAAAGTTGAGCAAAGTGTTTATGCCCTTTTGCGCACACGAGACATGGCGATTGCACGGTATAAAGAGTTCAATATTCCCACAGATTGGCTGCTTGATTCTGGTGTCGTGGGCAAGATTAAACTTGCATCTGTTCAACTGGCACGAAAGTACATGAAAAGGGTTACGTCAGAACTAGATGCCGCTTTGAATGTTCCAGATAAGGAGCCAATTAGAGAGTTCCTACTTTTGCAAGGTGTACGTTTTGCATTCCGAGTTCATCAGTTTGCTGGAGGTTTTGACGCAGAGAGCATGAACGCGTTTGAGAATCTAAGAAATCGTGTGCATGGACAAGCTGAAGAAACGGATAAAATGAGTTCAACTAACTAAGGTTTCTTGTGTTCACTTTTATCTCCAATCCACAGTATATGGTATTGTCTTGTGGGATTTTAGAGATTTTTTCTGTACGATAACTTGTCAGTTTTTTAACTATCTTAGGTTAAAGGAACGTTACATTTAAAGAATGGAAGCCCAGTAGATAGTAGGTTGTTGTACCATACAGGTGAAGTAGGATATGTAATGTCAACATCATTTGCACAATGAAGTGCAGCCATTATATATTGCACATTAAAATGTATTCTGTAAATGGCAGAAGCAAGCATCTTAGGTGTGGCTTGAACTGTAGCCCACCATTGTAATTTTATTCTGGCATGTATATTTCCAAAATCTCAATCTAGCGATTCGTCTTC

Fln Alignment:

sp_v1.1_unigene2403___VTHVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRACAYxEIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKKLESVVASFADNPKLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNVPDKEPIREFLLLQGVRFAFRVHQFAGGFDAESMNAFENLRNRVHGQAEETDKMSSTN
A9NUN1______________VADVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRASAYxNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNDPDKEPIKEFLLLQGVRFAFRVHQFAGGFDAESMNAFEDLRNRVHGQAEETDKMSSTN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
703			66	33	1.0
857	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain