SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2401

Length: 1716 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2401

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer alpha subunit n=2 Tax=Poaceae RepID=Q6RYF4_HORVD	-	-	75%
FL-Next	sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice).	-	-	72%
Blast2go	coatomer alpha	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	intracellular part	GO:0044424	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Coatomer, alpha subunit, C-terminal	IPR010714	-	0.0	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0J3D9

Fln msg: your sequence is shorter than subject: 344 - 1218

Fln protein: GGWDLEDLELPADVATANAAGTTHSTSFVTPTPGMPVSQIWIQKSSLAGEHAASGNFDTAMRLLSRQLGIKNFAPLKPLFLDLYLGSHTYLPAFVSAPVVSLALERGWSETASPNVRGPPALVFRFSLLDEKLRVAYKATTEGKFSEALRLFLTILHTIPVIVVDSRREVDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNAMGVCYKGGNFNTAANFARRLLESEPPANHATKARQVLQACERQLQDAKKLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR*

Protein Length: 345

Fln nts: ATGGGGGATGGGATCTTGAAGATTTGGAGCTACCTGCAGATGTTGCTACTGCAAATGCTGCAGGTACAACTCATTCAACATCATTTGTTACCCCAACACCAGGTATGCCAGTAAGTCAAATCTGGATACAGAAATCTTCTCTTGCAGGTGAGCATGCAGCTTCTGGTAACTTTGATACAGCCATGCGCCTCTTAAGTCGACAACTTGGTATTAAGAATTTTGCTCCATTAAAACCTTTGTTTTTGGATCTTTATCTGGGCAGCCATACATACCTTCCTGCATTTGTTTCTGCACCTGTGGTCTCCTTGGCATTAGAGAGAGGCTGGAGTGAGACTGCTAGCCCAAATGTCAGAGGTCCACCTGCTTTGGTATTTAGGTTTTCTTTATTAGATGAGAAACTTAGAGTAGCTTACAAAGCCACCACAGAGGGGAAGTTTAGTGAAGCATTGAGGTTATTTCTTACCATCTTGCACACAATTCCAGTTATTGTTGTAGATTCAAGAAGGGAGGTTGATGAAGTGAAGGAATTGATTGGAATTGCTAAAGAATATGTTCTGGGTCTTCGGATGGAGGTCAAGAGAAAGGAAGTTAAGGATGATGCTGTTCGACAGCAAGAGCTTGCAGCCTATTTTACTCATTGCAACCTTCAAAAGGTCCATTTGAGGTTGGCTTTGCTGAATGCCATGGGTGTTTGCTACAAGGGAGGGAACTTCAATACAGCTGCTAACTTTGCTCGACGACTGCTGGAAAGTGAACCCCCTGCAAACCATGCAACAAAGGCCCGACAAGTTCTGCAGGCATGTGAGAGGCAGTTGCAGGATGCCAAAAAACTGAATTATGACTTTAGAAATCCTTTTGTTGTTTGTGGAGCAACTTTCACACCCATTTACCGTGGTCAGAAGGATGTCTCCTGTCCATATTGTACAGCACGCTTTGTTCCAAGTGTACAAGGGAATCTCTGCCCTATATGTGAGCTTGCAGTTGTGGGTACTGATGCTTCTGGGTTGCTTTGCTCAACTACTCAGATAAGGTGA___TGTCAGCAGCATTGGATTCTTGCTGACAATGCATTTTTATTTCAAGAAGTTCCATTGCCTGCGTATATGTCCGGATTGATGCTGTACTCTCTGCCTTTGAGAACCACGTTGAGAGATATGCCAGGACAATTTGTAACAAGTCTTGGACAAACTTGAGGGCCTTCTTAAGATATTGGAAGAAACAGTATATTGAAACTGAAATGAGGGTAGAAGTAATTTTCCATGTTTTTTCATTGTTTACTATTTGAAATTTAAGTCTGGTTTTTTGCTTCCCTTTACCAGTCTCATACAATGAAAAGTGTGAGTCCTTTAGCTTATGTCTGGAGAATTTCTGATAGACACCAGGGTGTTTATCTTGTCTTTATCATGCAGATTTTCCAGTGGTTTGTCTGAGTATAAACAATAATTAGGCTTTTATTAGGCAACCTCAAGAAGTTACATTTAGGTTTTCACATTAAATTGAATTGCTTGGAAGCTTCTTCCAGCTGTAGATTACTTCAATCCCTTAATTTTAAAGGTCTCTGTCAATTAATTTAACTGTTTTAATTGCATAGATGGTTTTCACATGGTGTTCTTTGTGTAATGAAATGAGTTCTTAAATGAGCTCTATGCTGGTTGTTGTTGAAGAAAGACAAAGCATAGGTATGTAATGTTTTCACATTTGGTATTCTTACGAGGAGCA

Fln Alignment:

sp_v1.1_unigene2401___GGWDLEDLELPADVATANAAGTTHSTSFVTPTPGMPVSQIWIQKSSLAGEHAASGNFDTAMRLLSRQLGIKNFAPLKPLFLDLYLGSHTYLPAFVSAPVVSLALERGWSETASPNVRGPPALVFRFSLLDEKLRVAYKATTEGKFSEALRLFLTILHTIPVIVVDSRREVDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNAMGVCYKGGNFNTAANFARRLLESEPPANHATKARQVLQACERQLQDAKKLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR
Q0J3D9______________GGWDLEDLELPPEAETPKNAGNALSVVFVAPPPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKPLFLDLHMGSHSYLRALATAPIIPVAVEKGWSESASPNVRGPPALVFTFSQMEDRLKAAYKATTEGKFPEALRQFLNILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNESQAKRARQVQQQCSGK-KDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQLR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
129		80		20	0.995493
401		83		16	0.994512
571	87		12		0.992554
629		87		12	0.992554
745		11		88	0.923564
749	11		88		0.923564
752			10	90	0.90298
757	11	88			0.923564
758		88		11	0.923564
759		88	11		0.923564
760		88	11		0.923564
761			11	88	0.923564
1231		7		92	0.999602
1305		22		77	0.999999
1586	20		20	60	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain