SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2390

Length: 462 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2390
GTGTATCGAAATGCTGCAATGCAATCAAACTCAAAGAAAAGTGTTCCTAGAAGGACAGGTCAAACGGCAATTTCAAGCAGAATGGTCAAATGCCTAACCAATGTGGAAGCGTTCTCTCTCGAAGCTGCAGATCTGGAATATGTCGCCAATCATTTTAGTCGTTATATGAGGAATCCACGAGTTCAAGGAGCAATAAGGTATGAATCACCTTATTGGAGATCATGGGCAGCTAGGCGAATACAGACTGCTTGGAAATATAGGAAAAGCAAGCTCATCAAGTCTCGTTTAGCTGATGTTAATGCTTCAATCCCAAATTGAAATCTTGAATTTCACCAATATAAAGAATTGACTGACAATGGATTGTTCTAACATCGATCCATTGGATAACATTCATTTTTTAGATATGATTTTGGTTCACGTCTAATTCTTTTGCAGGTGTCCGTGCACACGATATTTTATGCT

Ace file of the UniGene sp_v1.1_unigene2390 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclic nucleotide gated channel n=1 Tax=Malus x domestica RepID=A9CRE4_MALDO	-	-	4.0e-24	62%
FL-Next	sp=Putative cyclic nucleotide-gated ion channel 19; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	protein	-	-	8.30614e-24	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	8.30614e-24	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LDR2

Fln msg: your sequence is shorter than subject: 106 - 729

Fln protein: VYRNAAMQSNSKKSVPRRTGQTAISSRMVKCLTNVEAFSLEAADLEYVANHFSRYMRNPRVQGAIRYESPYWRSWAARRIQTAWKYRKSKLIKSRLADVNASIPN*

Protein Length: 107

Fln nts: GTGTATCGAAATGCTGCAATGCAATCAAACTCAAAGAAAAGTGTTCCTAGAAGGACAGGTCAAACGGCAATTTCAAGCAGAATGGTCAAATGCCTAACCAATGTGGAAGCGTTCTCTCTCGAAGCTGCAGATCTGGAATATGTCGCCAATCATTTTAGTCGTTATATGAGGAATCCACGAGTTCAAGGAGCAATAAGGTATGAATCACCTTATTGGAGATCATGGGCAGCTAGGCGAATACAGACTGCTTGGAAATATAGGAAAAGCAAGCTCATCAAGTCTCGTTTAGCTGATGTTAATGCTTCAATCCCAAATTGA___AATCTTGAATTTCACCAATATAAAGAATTGACTGACAATGGATTGTTCTAACATCGATCCATTGGATAACATTCATTTTTTAGATATGATTTTGGTTCACGTCTAATTCTTTTGCAGGTGTCCGTGCACACGATATTTTATGCT

Fln Alignment:

sp_v1.1_unigene2390___ISSRMVKCLTNVEAFSLEAADLEYVANHFSRYMRNPRVQGAIRYESPYWRSWAARRIQTAWKYRKSKLIKSRLADVNAS
Q9LDR2______________VSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQLQRLNTAHSNSN

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
123		33		66	1.0
233		12		87	0.992554
252	87		12		0.992554
255	87			12	0.992554
256	12		87		0.992554
270			11	88	0.923564
317			30	70	1.0
320	30		70		1.0
321		90		10	0.90298
324	70	30			1.0
327	30			70	1.0
328	70		30		1.0
329			30	70	1.0
330	10			90	0.90298
332	40	60			1.0
333	70	30			1.0
381	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain