SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2348

Length: 2088 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2348
CGTCGTGACCTTGGCTGTCACTCAGTTTTCATTACGATTGTCAAACATGTGGAGATCAAAATCTATGCCTGAGCTTCACGATTACACTGAATACAGAAGAGGAAGGATCCCGTGCGGTCGCGGTGGGGAAGCCGTCTATTAACGTTAACCTGATTGCTCGGATCATTCTCCGTCTCGTTAAAATGTCCGTTACTTTTTGTAATTTTCTGTTTACATTGAATGCGAGGGCGTGGCTCAGCCAGGTGACAGGTCCGTGATGGTCATTCAAGGCTCAGAATTGCTCAGAACAAATCCGGCCTCGCATTTACTGTTAACTACCGTCCATGAATAGTTCACTTTTGACACAGATATTTCCCAAATCTCCGTTCTGTGTCTGGAGTATGGATCTGCTCATAATTATAACGACCATTCTGCGTTGAATTTCTTTGGCTGTTGTATCGAGGCAGGGCCGGGCATGGGTTGCTTCAGAGGCCCCAGGGAGAGAGTCGAGTCAGATATCGAAGAAGCTAATTTGAAATGCGCAGATTCATTCTCGTTTCCTGTCCACATAATCCCCATTAATATCCGTTCGACCAGCCTCAAGATCACCAGCAGAGGCATTGGGACTTCGCCGGATTCGAACCTTGGCAGAACCAAAGAACCACAGGGTTTCCTCCACCACTCGGCTCCCCTGCCTGTGAGAACGGAATCGGGGTCCCAGAGGCCGGATTTTGGGCTCTCCGGCCAGATTTGGCAGAGCAAGGGCGTGGCTTTTGGTGGGCCACCGTTGCCTCTTCCTTTACCAGCTGACTCAGAGAGTGGGAATCGATCCTTTGCCCTCACGTCAGCGCCCCGGCCATTTCAAGAAACGAAGCCTGGTTCTTGGACACCGTACGCTTCGGAGCCGAGGCCATTGCCGCCCCCAAAAGACCAGCTCGCCACGTTCCGGGCTTTCTCCAGGGAAGAACTCGCTGGAGCCTGCCAGAACTTCTCGCCGGATTTGTTATGCAGAGAGGTAGTTGCCGGGCCCGTTTACAGATGCCGCTTGGGCAACATAACAGATGTTGACATTACTCGGATCACCTCCGAGCCTCCCAAGAGCGTAAGAAAATGGATCGTGGAGTTGAAATCCGTGGCGCGGCTACGGCATCCTCATCTTTGCGATGTTCTGGGTTTCTACGTCTACATCCCGGTCCCGGATTCGAACCCGAGACCCTCGTCGGAGCAGCTGGTGGTTTACGCTGGGATGCAGAACGGTAGCCTGGACCAGCTGCTATACGGCAGGAGTTCCGATAAACCGCCGCTGGATTGGCCTTCCAGACTGAAGATCGCGTTCGGCGCAGCTCAGGGCCTGGCATTTCTGCACGAAATTTCGCCTGTTCAGGTTGCGTACAGATATTTTGAGACAATGAATATTCAGGTTGATAAAGATTTCAATGCCAGGCTTTCGGATTACTGTTTTGCGCGAAGGCCCATTACAAATACCTATGTTTTGCAAAGGGCGGAAGCTTACTCGGCCCCTGAGACGCTGAGAGACGGGCATGTTTTCCCGAAGAGCAACGTGTGGAGTTTCGGAGTGGTGTTGCTAGAGCTGTTAACGGGCAGAAAAAACATGGACGCCCTCTTTCCGGAAGAAGAACAGGATCTGGTGGCATTCAGCCGCTCATATCTGATGGATGACACGAAGCTGTATCTGATAATGGACCCCGAACTGAAGGGCTTCTACGCTACAAGACTCGCCAAGAGGGTCGCCAATCTAGCCCTCGAATGCTTCCAACAAGATGTGGTGCAGCGCCCCACCATGCGAGAAGTGGTTAATGTACTTCGATCTGTGTATAACAGTAGTACCATCACCACCACTAGTGTGAGATCGTTGGCCGCCATGAAAGGGGAAGAGAGAGCTCTCCAGCGCTGTGGCTCTGCCCAGGAGAAGGGTAGTCCGTTGTTTGTTTGCAAACAACCGAACAAACAATGGTTGAGATCGTGTGTATCTTCCCCTGTGCGGTGCGGTGTTCGAAGTGCAGAAAAACACCAGCAACGGTTTCCGTGACATCGAACTCAGTTGTTGATTGACAAATTATGTCTTTTGTAAAACTTTTATGGTACAAA

Ace file of the UniGene sp_v1.1_unigene2348

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase atsik, putative n=1 Tax=Ricinus communis RepID=B9SRS3_RICCO	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein kinase	-	-	61%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	61%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	61%
Blast2go	Protein kinase-like domain	IPR011009	-	61%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	61%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9E2

Fln msg:

Fln protein: MGCFRGPRERVESDIEEANLKCADSFSFPVHIIPINIRSTSLKITSRGIGTSPDSNLGRTKEPQGFLHHSAPLPVRTESGSQRPDFGLSGQIWQSKGVAFGGPPLPLPLPADSESGNRSFALTSAPRPFQETKPGSWTPYASEPRPLPPPKDQLATFRAFSREELAGACQNFSPDLLCREVVAGPVYRCRLGNITDVDITRITSEPPKSVRKWIVELKSVARLRHPHLCDVLGFYVYIPVPDSNPRPSSEQLVVYAGMQNGSLDQLLYGRSSDKPPLDWPSRLKIAFGAAQGLAFLHEISPVQVAYRYFETMNIQVDKDFNARLSDYCFARRPITNTYVLQRAEAYSAPETLRDGHVFPKSNVWSFGVVLLELLTGRKNMDALFPEEEQDLVAFSRSYLMDDTKLYLIMDPELKGFYATRLAKRVANLALECFQQDVVQRPTMREVVNVLRSVYNSSTITTTSVRSLAAMKGEERALQRCGSAQEKGSPLFVCKQPNKQWLRSCVSSPVRCGVRSAEKHQQRFP*

Protein Length: 526

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCATTACGATTGTCAAACATGTGGAGATCAAAATCTATGCCTGAGCTTCACGATTACACTGAATACAGAAGAGGAAGGATCCCGTGCGGTCGCGGTGGGGAAGCCGTCTATTAACGTTAACCTGATTGCTCGGATCATTCTCCGTCTCGTTAAAATGTCCGTTACTTTTTGTAATTTTCTGTTTACATTGAATGCGAGGGCGTGGCTCAGCCAGGTGACAGGTCCGTGATGGTCATTCAAGGCTCAGAATTGCTCAGAACAAATCCGGCCTCGCATTTACTGTTAACTACCGTCCATGAATAGTTCACTTTTGACACAGATATTTCCCAAATCTCCGTTCTGTGTCTGGAGTATGGATCTGCTCATAATTATAACGACCATTCTGCGTTGAATTTCTTTGGCTGTTGTATCGAGGCAGGGCCGGGC_-_ATGGGTTGCTTCAGAGGCCCCAGGGAGAGAGTCGAGTCAGATATCGAAGAAGCTAATTTGAAATGCGCAGATTCATTCTCGTTTCCTGTCCACATAATCCCCATTAATATCCGTTCGACCAGCCTCAAGATCACCAGCAGAGGCATTGGGACTTCGCCGGATTCGAACCTTGGCAGAACCAAAGAACCACAGGGTTTCCTCCACCACTCGGCTCCCCTGCCTGTGAGAACGGAATCGGGGTCCCAGAGGCCGGATTTTGGGCTCTCCGGCCAGATTTGGCAGAGCAAGGGCGTGGCTTTTGGTGGGCCACCGTTGCCTCTTCCTTTACCAGCTGACTCAGAGAGTGGGAATCGATCCTTTGCCCTCACGTCAGCGCCCCGGCCATTTCAAGAAACGAAGCCTGGTTCTTGGACACCGTACGCTTCGGAGCCGAGGCCATTGCCGCCCCCAAAAGACCAGCTCGCCACGTTCCGGGCTTTCTCCAGGGAAGAACTCGCTGGAGCCTGCCAGAACTTCTCGCCGGATTTGTTATGCAGAGAGGTAGTTGCCGGGCCCGTTTACAGATGCCGCTTGGGCAACATAACAGATGTTGACATTACTCGGATCACCTCCGAGCCTCCCAAGAGCGTAAGAAAATGGATCGTGGAGTTGAAATCCGTGGCGCGGCTACGGCATCCTCATCTTTGCGATGTTCTGGGTTTCTACGTCTACATCCCGGTCCCGGATTCGAACCCGAGACCCTCGTCGGAGCAGCTGGTGGTTTACGCTGGGATGCAGAACGGTAGCCTGGACCAGCTGCTATACGGCAGGAGTTCCGATAAACCGCCGCTGGATTGGCCTTCCAGACTGAAGATCGCGTTCGGCGCAGCTCAGGGCCTGGCATTTCTGCACGAAATTTCGCCTGTTCAGGTTGCGTACAGATATTTTGAGACAATGAATATTCAGGTTGATAAAGATTTCAATGCCAGGCTTTCGGATTACTGTTTTGCGCGAAGGCCCATTACAAATACCTATGTTTTGCAAAGGGCGGAAGCTTACTCGGCCCCTGAGACGCTGAGAGACGGGCATGTTTTCCCGAAGAGCAACGTGTGGAGTTTCGGAGTGGTGTTGCTAGAGCTGTTAACGGGCAGAAAAAACATGGACGCCCTCTTTCCGGAAGAAGAACAGGATCTGGTGGCATTCAGCCGCTCATATCTGATGGATGACACGAAGCTGTATCTGATAATGGACCCCGAACTGAAGGGCTTCTACGCTACAAGACTCGCCAAGAGGGTCGCCAATCTAGCCCTCGAATGCTTCCAACAAGATGTGGTGCAGCGCCCCACCATGCGAGAAGTGGTTAATGTACTTCGATCTGTGTATAACAGTAGTACCATCACCACCACTAGTGTGAGATCGTTGGCCGCCATGAAAGGGGAAGAGAGAGCTCTCCAGCGCTGTGGCTCTGCCCAGGAGAAGGGTAGTCCGTTGTTTGTTTGCAAACAACCGAACAAACAATGGTTGAGATCGTGTGTATCTTCCCCTGTGCGGTGCGGTGTTCGAAGTGCAGAAAAACACCAGCAACGGTTTCCGTGA___CATCGAACTCAGTTGTTGATTGACAAATTATGTCTTTTGTAAAACTTTTATGGTACAAA

Fln Alignment:

sp_v1.1_unigene2348___MGCFRGPRERVESDIEEANLKCADSFSFPVHIIPINIRSTSLKITSRGIGTSPDSNLGRTKEPQGFLHHSAPLPVRTESGSQRPDFGLSGQIWQSKGVAFGGXXXXXXXXADSESGNRSFALTSAPRPFQETKPGSWTPYASEPRPLPPPKDQLATFRAFSREELAGACQNFSPDLLCREVVAGPVYRCRLGNITDVDITRITSEPPKSVRKWIVELKSVARLRHPHLCDVLGFYVYIPVPDSNPRPSSEQLVVYAGMQNGSLDQLLYGRSSDKPPLDWPSRLKIAFGAAQGLAFLHEISPVQVAYRYFETMNIQVDKDFNARLSDYCFARRPITNTYVLQRAEAYSAPETLRDGHVFPKSNVWSFGVVLLELLTGRKNMDALFPEEEQDLVAFSRSYLMDDTKLYLIMDPELKGFYATRLAKRVANLALECFQQDVVQRPTMREVVNVLRSVYNSSTITTTSVRSLAAMKGEERALQRCGSAQEKGSPLFVCKQPNKQWLRSCVS
D5A9E2______________MGCFRGPRERVESDIEEANLKCADSFSFPAHIIPINLRSTSLKSTNTGTGTSPDSNLGRTKEPQGLLHHSASLPAGTDSGSQKPDFGLSSPIWRSNGVAFGGPPLPLPLPADPETAARSVALKSASRSFQETRGGSWTPYASEPRPLPPPKDQLATFRVFSREELAGACQNFSPELLCRDGVAGPVYRCRLGSIIDADITRITSEPPKSFRKWLVELKSVARLRHPHLCDVLGFYVQISAPDWNPKPSSEQLVVYAGMHNGSLDGLLYGRTSDKPPLDWPSRVKIAFGAAQGLAFLHQISPVQVAYRCFETLNIQVDRDFNARLSDYCFARRPPANTYVLPRVEAYSAPETLRDGHVFPKSNVWSFGVVLLELLTGRKNMDALFPEEEQNLVAFSRSFLMEEKKLYLIMDPELKGFYPTRLAKRIANLALECFQEDVVERPTMREVVNVLRSVYSSSS-NSSCVRLVPAMKAEERVLLRSGSARDNDGPLFVCEERRK----SCTS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
821		16		83	0.994512
823		83		16	0.994512
825		83	16		0.994512
827		83	16		0.994512
830		16	83		0.994512
832		83		16	0.994512
833	83		16		0.994512
837		66		16	0.988813
839	16	83			0.994512
842			83	16	0.994512
844	16	83			0.994512
972	75			25	0.996473
1483			25	75	0.996473
1484			75	25	0.996473
1597	75			25	0.996473
1598	75		25		0.996473
1599	75		25		0.996473
1600	75		25		0.996473
1644	20			80	0.995493
1646		80	20		0.995493
1647	80		20		0.995493
1667	20			80	0.995493
1745		16		83	0.994512
1773	11		88		0.923564
1836	88		11		0.923564
1889	87		12		0.992554
1919	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain