SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2329

Length: 543 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene2329
TTATGTTCCATCCAATTATGATAATTCTGTCAGAGCTATGCAGGGTTTCTTGGCAGCTGAACATCAGGAAAGGCCCCTTGAGATACTGCGAAAAGTTGCTGGCAATGATGTGTGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGTGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACGCTGGATGTAAAGGTTTGGGAAACCTTCGGTTATTAATTTGTTCCAGTCTCTTGGTAATATGTATGCAAATTCAATATGGGAGGAGCTTTTAGAAATTGGGCAGGACAGCGTTGATTGCAATAGCAGATTAGATTGCCATGAACATAAGGCATATTGCATATCCATCAACAAACCAAGTGCCAGGGATTCTCTTTCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGGTTAGTATCAAAGGAAAAATTTGATGCGGAGTTACCACCATTGGAGTATCGTATGTGGGATGCAGTTC

Ace file of the UniGene sp_v1.1_unigene2329

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative	-	-	2.00386e-43	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	4.2039e-45	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	4.2039e-45	86%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	4.2039e-45	86%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	4.2039e-45	86%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	4.2039e-45	86%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	4.2039e-45	86%
Blast2go	protein binding	GO:0005515	Molecular Function	4.2039e-45	86%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	4.2039e-45	86%
Blast2go	cytosol	GO:0005829	Cellular Component	4.2039e-45	86%
Blast2go	trans-Golgi network transport vesicle	GO:0030140	Cellular Component	4.2039e-45	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arf GTPase activating protein	IPR001164	-	4.2039e-45	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 192 aas, your sequence is shorter than subject: 79 - 370

Fln protein: MQGFLAAEHQERPLEILRKVAGNDVCADCGCHDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWETFGY*

Protein Length: 80

Fln nts: TTATGTTCCATCCAATTATGATAATTCTGTCAGAGCT_-_ATGCAGGGTTTCTTGGCAGCTGAACATCAGGAAAGGCCCCTTGAGATACTGCGAAAAGTTGCTGGCAATGATGTGTGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGTGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACGCTGGATGTAAAGGTTTGGGAAACCTTCGGTTATTAATTTGTTCCAGTCTCTTGGTAATATGTATGCAAATTCAATATGGGAGGAGCTTTTAGAAATTGGGCAGGACAGCGTTGATTGCAATAGCAGATTAGATTGCCATGAACATAAGGCATATTGCATATCCATCAACAAACCAAGTGCCAGGGATTCTCTTTCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGGTTAGTATCAAAGGAAAAATTTGATGCGGAGTTACCACCATTGGAGTATCGTATGTGGGATGCAGTTC

Fln Alignment:

sp_v1.1_unigene2329___RPLEILRKVAGNDVCADCGCHDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLD
B8LLJ7______________RRLKDLLAQPDNQVCADCCSPDPRWASTSIGVFICIKCSGVHRSLGVHISKVLSVTLD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
447	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain