SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2322

Length: 3087 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2322
ATTCATCCACTACAGGGAGAGCTTGATAAAATTGAATTTGCTTACAATCAATCTGAGTTGCCTGAGCCTCTTCAGCCTGCCCCATGGGAGAGTACGCCATTCAAATTTGTAGAGAGAGTTCAGGATCTGAAAGAAGTGGCCATGAAATTGGAATCAGCAAGTGAAATTGCTGTTGATCTTGAGCACAATCAGTACAGATCTTTCCAGGGTTTAACATGTTTGATGCAAATTTCTACAAGAGCAGAGGACTTTGTGGTTGATACCTTGATATTGCGCAAGTACATTGGTCCTTGTTTGAAACACATATTTGCAAATCCTGCTATTAAAAAGGTGATGCATGGAGCAGATCGAGATATACTGTGGCTGCAGCGTGACTTTGGAATTTTCATATGTAACTTATTTGATACTGGCCAGGCCTCAAGAGTATTGCAATTGGAGCGAAATAGCCTGGAGTTTCTACTACAGCACTTCTGTGATATCACTGCTGATAAAGAATACCAGACTGCTGATTGGCGTCTGCGGCCACTGCCTTCAGAGATGCTGAAGTATGCAAGAGAAGATACTCATTATCTTTTATATATCCATGACGTAATGCAGCAGAGATTAAAGTCCATGCCCTCTGAGAGCGGGGAGGCTCCACTTTTTGAGGTTTATAAACGCAGCCGTGATATATGCTTGCAGATTTATGAAAAAGAACTTCTGACAGAAACGTCTTATTTACATGTTTATGGATTACAGGATGGAAACCTCAGTCCGGAGCAGCTTTCTGTTGCCGCTGGCTTATATGAATGGAGGGATAAGATAGCTCGTGTGGAAGATGAAAGTACTGGCTATATATTGCCAAACAAAATACTACTACAAATTGCTAAGAGGATCCCTCGCACCACCAATGACCTTCGTGCATTTGTCAACGGCAGGCATCCTTTTGTCGAGCGGAATCTTGCTGCTGTACTTGATGTTATAAAACAAGCCAGGGAAATGAGAAATAAGGCAGTTGAAATTTCTCCAAACCCACTGGAACAAGTTTCTAGGAAGGGAGCAGATGGGCTAAAAGAGATATCAGACACTTGCAACCAACCTTTGCTAGTATCAGCTGATATTGCAGATGCAGTGAATGCCAGGAATGTTTCATATGTTGAGGGATTGGATGCTAAAGTTGGGTCTCTATGTGAGAATTCATCACAGCTGGAAGTGACAGAAGGTGCACTTTCTAGTAGTATAAAATCTCAGGGTGCAAGAGAGGTTCTGAATGAGGGAATAGATTCAGTTTCTATCAAATCTGATAATCGAGAAAGTATTTCTAGTGAACAAACAGGGGGTCTCATTGAAAAGAAACAGGCAGAGTTCATAGAATCCTCAAGTTCAGCTGCTGATACCTGTGTCGTTGGAACAGCTTCATTGAAGAAGGCTGGTCTGGCTTCTACTGTAGTTGGTCGAGCCTCTAATTCATTGCTTTTCAATAAGAAATGTGAGTCTGTAAAGGGAAGTCAGGCAATCGTAAATGAAAGTAAAGGTAATCTGGTTTGTCAATCACTGGAAGAGCAATCCCAACACTCTTTGTCAATAGAAGGCTGTTCTTCTGAGAGACCTGCAGTTGTAAACTTAGAGAATAAAATGGAATCTTCAAAGCAAGAAAATAATTCACAATTGATTAAGCCTGCAGAACTTTCTAATTCTGAGAAATTGGTCCAGAATGGTGCAACCGCATCTGATTGTAATTCCTTGCAGCCCAACTGTGTGGCCCTGGAGGAAGCTCCAGAGGTTAGAGATAAAGTTGGTGCAAAAACTGGAGTGACATTGGTACAGGCACAGAAAAGGCCAACTCGAGGATTGGCAGCTATGCTGGGTCCTTCAAGATTGAAACAAAAGAGCGAAATGAGTTCTAAAGTTTATGATACTGAGCAGGATAGCATAAGAAGCAAAGTGGAGCAAATCAAGGCATCGGTAGCTCTTCCATTTCACTCACTTTTGGGAACTCGGGAAATGGTTTCCATTCAGCATCCTCTTAATTCAGAAGAAGTTCCCAGTAATGAAGAATCACAGGTAGAGGTTGGCAAGCTTGTGGGTGCTGAAGTTGCATGTTCAAATGCTGAGATTGAAAATAATATGCGGGCACTCAAAATATCAGCTGGAATTGTTAGTGAGGAAGGAAGGAAATATAGGGCATGGTGGCCTCCATTGCAAGTCAAGGCAGATGGAAAGAAGTCTTCAATAAGACAAATAGATGATGGGGAGTTACCTCCTTCACTTTCTGAGTTACGCCACAGGTCTTGGCAGCAAGGTAAACGACAGTCTAGTTTTGAGTTTCAACAGAATACTAGATCGGAAGCTCCTTCCCATTTTAATGAGTATCTTGATGGAAAGAAGAGGAAAAAGAATTTGCCAGCAACCCGTGATTCCAATAAGTTTTTCACACCACGGGAAACTGACGGTAGCTTCAAGCCTTTTGATTATGCAGCAGCTAGAAGATCAATGAGTTTTGGAATGAGTGAAGAACGTGCAAGAGATGTCAAAGACCGCAGTGGAAGCAAAAATCTTTCCGGGAAAAAAGGGAAAGGTTCAGGATATGACCCCATGAACTTGGGAGCAAGTGAAGCTGGTGGAGATCTTCAACCAGGCAAAAGACGCCAAGTTTTCCCAGCTTCAGGCAATCGCAGTGCTACATTTCGTTAACTCTGCATTTTACTGGTCTCCTGTGCTCTAAGACAGCAGTGGAGAAAACACCATTTTATATTGTTTATTATTATCACCCATGCTTAATATGCATTTAGTCTGACCAATTCATCTGGCAAACATTGCTAGCATACTAAGAATGTATTTATGACAGAGCTATGCGACCCATAAAGTTGTCTTTAGCTGTCTTTGCTTACACCCATCTCTATTACCAGTGGGGCAGGCTTAGACCAGTAATTAAGTATCACTGATTTTGAACAAAGTTGAATTTCCTGTGTTGTATTGGTCATAGGACGTGTGTTTATTTGGTGCATGAATGTGCAATAGATTAACAGCACTGTCAGGATATAGCACATTATCTGATTTCAGAGGCCTCAACTTTTCTCTTTATAATCATTCAAATTTATTTAGTAC

Ace file of the UniGene sp_v1.1_unigene2322

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	3 -5	-	-	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	0.0	52%

Source	InterPros	Term	Type	Identity
Blast2go	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	72%
Blast2go	3'-5' exonuclease domain	IPR002562	-	72%
Blast2go	HRDC-like	IPR010997	-	72%
Blast2go	Ribonuclease H-like domain	IPR012337	-	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P151

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: EAKWSKSRHR*LFHFTHFWELGKWFPFSILLIQKKFPVMKNHR*

Protein Length: 45

Fln nts: ATTCATCCACTACAGGGAGAGCTTGATAAAATTGAATTTGCTTACAATCAATCTGAGTTGCCTGAGCCTCTTCAGCCTGCCCCATGGGAGAGTACGCCATTCAAATTTGTAGAGAGAGTTCAGGATCTGAAAGAAGTGGCCATGAAATTGGAATCAGCAAGTGAAATTGCTGTTGATCTTGAGCACAATCAGTACAGATCTTTCCAGGGTTTAACATGTTTGATGCAAATTTCTACAAGAGCAGAGGACTTTGTGGTTGATACCTTGATATTGCGCAAGTACATTGGTCCTTGTTTGAAACACATATTTGCAAATCCTGCTATTAAAAAGGTGATGCATGGAGCAGATCGAGATATACTGTGGCTGCAGCGTGACTTTGGAATTTTCATATGTAACTTATTTGATACTGGCCAGGCCTCAAGAGTATTGCAATTGGAGCGAAATAGCCTGGAGTTTCTACTACAGCACTTCTGTGATATCACTGCTGATAAAGAATACCAGACTGCTGATTGGCGTCTGCGGCCACTGCCTTCAGAGATGCTGAAGTATGCAAGAGAAGATACTCATTATCTTTTATATATCCATGACGTAATGCAGCAGAGATTAAAGTCCATGCCCTCTGAGAGCGGGGAGGCTCCACTTTTTGAGGTTTATAAACGCAGCCGTGATATATGCTTGCAGATTTATGAAAAAGAACTTCTGACAGAAACGTCTTATTTACATGTTTATGGATTACAGGATGGAAACCTCAGTCCGGAGCAGCTTTCTGTTGCCGCTGGCTTATATGAATGGAGGGATAAGATAGCTCGTGTGGAAGATGAAAGTACTGGCTATATATTGCCAAACAAAATACTACTACAAATTGCTAAGAGGATCCCTCGCACCACCAATGACCTTCGTGCATTTGTCAACGGCAGGCATCCTTTTGTCGAGCGGAATCTTGCTGCTGTACTTGATGTTATAAAACAAGCCAGGGAAATGAGAAATAAGGCAGTTGAAATTTCTCCAAACCCACTGGAACAAGTTTCTAGGAAGGGAGCAGATGGGCTAAAAGAGATATCAGACACTTGCAACCAACCTTTGCTAGTATCAGCTGATATTGCAGATGCAGTGAATGCCAGGAATGTTTCATATGTTGAGGGATTGGATGCTAAAGTTGGGTCTCTATGTGAGAATTCATCACAGCTGGAAGTGACAGAAGGTGCACTTTCTAGTAGTATAAAATCTCAGGGTGCAAGAGAGGTTCTGAATGAGGGAATAGATTCAGTTTCTATCAAATCTGATAATCGAGAAAGTATTTCTAGTGAACAAACAGGGGGTCTCATTGAAAAGAAACAGGCAGAGTTCATAGAATCCTCAAGTTCAGCTGCTGATACCTGTGTCGTTGGAACAGCTTCATTGAAGAAGGCTGGTCTGGCTTCTACTGTAGTTGGTCGAGCCTCTAATTCATTGCTTTTCAATAAGAAATGTGAGTCTGTAAAGGGAAGTCAGGCAATCGTAAATGAAAGTAAAGGTAATCTGGTTTGTCAATCACTGGAAGAGCAATCCCAACACTCTTTGTCAATAGAAGGCTGTTCTTCTGAGAGACCTGCAGTTGTAAACTTAGAGAATAAAATGGAATCTTCAAAGCAAGAAAATAATTCACAATTGATTAAGCCTGCAGAACTTTCTAATTCTGAGAAATTGGTCCAGAATGGTGCAACCGCATCTGATTGTAATTCCTTGCAGCCCAACTGTGTGGCCCTGGAGGAAGCTCCAGAGGTTAGAGATAAAGTTGGTGCAAAAACTGGAGTGACATTGGTACAGGCACAGAAAAGGCCAACTCGAGGATTGGCAGCTATGCTGGGTCCTTCAAGATTGAAACAAAAGAGCGAAATGAGTTCTAAAGTTTATGATACTGAGCAGGATAGCATAAGAAGCAAAGTGGAGCAAATCAAGGCATCGGTAGCTCTTCCATTTCACTCACTTTTGGGAACTCGGGAAATGGTTTCCATTCAGCATCCTCTTAATTCAGAAGAAGTTCCCAGTAATGAAGAATCACAGGTAG___AGGTTGGCAAGCTTGTGGGTGCTGAAGTTGCATGTTCAAATGCTGAGATTGAAAATAATATGCGGGCACTCAAAATATCAGCTGGAATTGTTAGTGAGGAAGGAAGGAAATATAGGGCATGGTGGCCTCCATTGCAAGTCAAGGCAGATGGAAAGAAGTCTTCAATAAGACAAATAGATGATGGGGAGTTACCTCCTTCACTTTCTGAGTTACGCCACAGGTCTTGGCAGCAAGGTAAACGACAGTCTAGTTTTGAGTTTCAACAGAATACTAGATCGGAAGCTCCTTCCCATTTTAATGAGTATCTTGATGGAAAGAAGAGGAAAAAGAATTTGCCAGCAACCCGTGATTCCAATAAGTTTTTCACACCACGGGAAACTGACGGTAGCTTCAAGCCTTTTGATTATGCAGCAGCTAGAAGATCAATGAGTTTTGGAATGAGTGAAGAACGTGCAAGAGATGTCAAAGACCGCAGTGGAAGCAAAAATCTTTCCGGGAAAAAAGGGAAAGGTTCAGGATATGACCCCATGAACTTGGGAGCAAGTGAAGCTGGTGGAGATCTTCAACCAGGCAAAAGACGCCAAGTTTTCCCAGCTTCAGGCAATCGCAGTGCTACATTTCGTTAACTCTGCATTTTACTGGTCTCCTGTGCTCTAAGACAGCAGTGGAGAAAACACCATTTTATATTGTTTATTATTATCACCCATGCTTAATATGCATTTAGTCTGACCAATTCATCTGGCAAACATTGCTAGCATACTAAGAATGTATTTATGACAGAGCTATGCGACCCATAAAGTTGTCTTTAGCTGTCTTTGCTTACACCCATCTCTATTACCAGTGGGGCAGGCTTAGACCAGTAATTAAGTATCACTGATTTTGAACAAAGTTGAATTTCCTGTGTTGTATTGGTCATAGGACGTGTGTTTATTTGGTGCATGAATGTGCAATAGATTAACAGCACTGTCAGGATATAGCACATTATCTGATTTCAGAGGCCTCAACTTTTCTCTTTATAATCATTCAAATTTATTTAGTAC

Fln Alignment:

sp_v1.1_unigene2322___MILSRIA*EAKWSKSRHR*LFHFTHFWELGKWFPFSILLIQKKFPVMKNHR
A9P151______________MILSRIMQETKWRKSRHRYRFHFSHFWELGKWFPFSILLIQKKFPLMKSHR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
699		20		80	0.995493
2687		90	10		0.90298
2688			10	90	0.90298
2733	13			86	0.999973
2836		88		11	0.999937
3028		66	33		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2144	2156	AGGA AGGA AGGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain