SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2321

Length: 1496 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2321

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucanase, putative n=1 Tax=Ricinus communis RepID=B9SH08_RICCO	-	-	65%
FL-Next	tr=Beta-glucanase, putative; Ricinus communis (Castor bean).	-	-	67%
Blast2go	glycosyl hydrolase family protein 43	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 43	IPR006710	-	0.0	81%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SH08

Fln msg: your sequence is shorter than subject: 398 - 499

Fln protein: VKQRGKKFISQSGKHRGRRHTPVDDFLDVTSQRRSLYFPEKNLAVNPLKTEDSRKYYFYPGREWCDTDSRPIQAHGGGIIYVEETQTFYWYGENKDGRSYHMHRKGTARVDIIGVNCYSSKDLWTWKNEGIVLPGEKVNKTHDLYVSNVLERPKVIYNDHTKQYVMWMHIDNANYSKASVGVAVSSSPTGPFHYLGSKQPHGFDSRDMTVFKDDDGQAYIVYSSEDNSELHIGQLTEDYKDLTKVMRRALVGEHREAPAVFKHRGLYYMITSGCTGWAPNTALAHSAESMLGPWETLGNPCMGGNEDFRRTTFFAQGTFVLPLPGMPYTFIFMADRWNPAELRDSRYVWLPLTMDGPADEPLEDDFEFPLWSRVSIYWHKQWKLPEGWNSPLPNQTS*

Protein Length: 399

Fln nts: AAGTCAAACAAAGAGGCAAAAAATTTATCTCCCAATCAGGAAAACACAGGGGAAGGAGACATACCCCAGTAGATGATTTTCTTGATGTCACATCTCAAAGAAGATCCCTTTACTTTCCAGAGAAAAATCTTGCAGTGAACCCTTTGAAGACTGAAGATAGCAGAAAGTACTACTTCTATCCTGGCAGAGAATGGTGTGACACAGACAGCAGGCCCATACAGGCACATGGCGGAGGAATAATTTATGTTGAAGAGACTCAGACCTTCTACTGGTATGGAGAGAATAAAGATGGTCGAAGCTACCATATGCACAGGAAAGGAACTGCACGAGTGGATATCATAGGCGTTAATTGCTACTCATCAAAGGACTTGTGGACATGGAAGAATGAAGGGATTGTTCTACCAGGCGAGAAAGTTAATAAGACGCATGACCTGTATGTCAGCAATGTGCTTGAGAGGCCCAAAGTGATTTATAATGATCACACCAAACAATATGTAATGTGGATGCACATTGACAATGCTAACTATTCCAAAGCTTCTGTTGGTGTGGCAGTTAGTTCCTCCCCCACTGGGCCATTCCATTATCTTGGCAGCAAACAGCCACATGGTTTTGATAGCCGAGATATGACAGTATTTAAAGATGACGATGGTCAAGCTTATATTGTCTATTCATCAGAAGACAATAGTGAATTGCATATTGGGCAGTTGACAGAAGACTACAAGGATCTTACTAAAGTCATGCGAAGGGCTTTGGTTGGAGAGCATAGAGAGGCACCTGCTGTTTTCAAGCACAGGGGGCTATATTATATGATCACTTCTGGTTGCACTGGCTGGGCCCCAAATACAGCTTTGGCTCATTCAGCAGAGTCTATGCTAGGACCTTGGGAAACATTGGGGAATCCATGCATGGGGGGTAATGAAGATTTTAGAAGAACTACATTTTTTGCCCAGGGAACGTTTGTTTTACCTCTTCCTGGCATGCCTTATACATTTATATTTATGGCAGATCGATGGAACCCAGCTGAATTAAGAGACTCACGTTATGTTTGGTTGCCTCTCACAATGGATGGGCCTGCAGACGAGCCATTGGAGGATGATTTTGAGTTCCCTCTGTGGTCAAGGGTGTCTATTTATTGGCATAAGCAATGGAAGCTTCCAGAAGGATGGAATTCACCATTGCCCAATCAAACTAGTTAG___TGATAGATAGTCTGTATTCTAATAACATTACATGATTCCTAGGTTACTGCATTCTTGGTCATTTGCAATGGCCAGTATATTAGCGCTGTGACAAGTGCATGTTCCAATAGTACCGTCTATATTTAGCAAACATAATTTCAAAAGAAAAACTATTGGACAGAAGCCATCTAACACCATTTGCTTTCTTTAATGAAAAAGCTGATTCTACCACATATCCTAAACCAAAAGTCTACAGCTCTTGTAAAAGTTGGTCTATCCAGCAAATGATTAATAGAAATTACTTGCTGTCTTCAAGTGCAA

Fln Alignment:

sp_v1.1_unigene2321___RGKKFISQSGKHRGRRHTPVDDFLDVTSQRRSLYFPEKNLAVNPLKTEDSRKYYFYPGREWCDTDSRPIQAHGGGIIYVEETQTFYWYGENKDGRSYHMHRKGTARVDIIGVNCYSSKDLWTWKNEGIVLPGEKVNKTHDLYVSNVLERPKVIYNDHTKQYVMWMHIDNANYXXXXXXXXXXXXPTGPFHYLGSKQPHGFDSRDMTVFKDDDGQAYIVYSSEDNSELHIGQLTEDYKDLTKVMRRALVGEHREAPAVFKHRGLYYMITSGCTGWAPNTALAHSAESMLGPWETLGNPCMGGNEDFRRTTFFAQGTFVLPLPGMPYTFIFMADRWNPAELRDSRYVWLPLTMDGPADEPLEDDFEFPLWSRVSIYWHKQWKLPEGW
B9SH08______________RGRRSPRAAKRRPKRPTTLIDEFLDENSQLRHVFFPGMKNAIDPTNDAGNNSFYYHPGRIWLDTEGNPIQAHGGGILYDERSKTYYWYGEYKDGPTYHAHKKGAARVDIIGVGCYSSKDLWTWKNEGIVLAAEDMNETHDLHKSNVLERPKVIHNDKTGKYVMWMHIDDVNYTKAAVGIAISDSPTGPFDYVHSKRPHGFESRDMTIFKDDDGVAYLIYSSEDNSELHIGPLTDNYLDVTHVMRRILIGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHAAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTFVIPLTGLPGSFIFMADRWNPADLRDSRYVWLPLIVGGRADRPLEFNFGFPVWSRVSIYWHRKWRLPSGW

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
173		66		33	0.997452
176		66		33	0.997452
230	33	66			1.0
240	66	33			0.997452
304	33		66		1.0
344		80		20	0.995493
393	62		37		1.0
407	37	62			1.0
416		37		62	1.0
425	44		55		1.0
461		85		14	0.993533
514	85		14		0.993533
701		33	66		0.997452
797		20	80		0.995493
848	16			83	0.994512
899		16		83	0.994512
907	87	12			0.992554
918		12		87	0.992554
953		10	90		0.90298
957	10		90		0.90298
1004		90	10		0.90298
1020	81		18		1.0
1021			81	18	1.0
1026	81	18			1.0
1027		18		81	1.0
1030	81			18	1.0
1032	81		18		1.0
1033		18	81		1.0
1034	81			18	1.0
1035		81	18		1.0
1040			81	6	1.0
1041		6		93	0.99903
1042	6	12		81	1.0
1086	90	9			1.0
1089	9	6	84		0.999999
1091	93			6	0.99903
1092		6	93		0.99903
1098		6		93	0.99903
1099		6		93	0.99903
1103	93		6		0.99903
1104		6	93		0.99903
1390	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain