SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2312

Length: 2045 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2312
ATGGGAAGTCAGACAAAGCGAAAGAAAAGAATGCAACTATTCAAATGACAGTTGCAGCTGAGAAAATTGAAACTCTGCCCTATGTTATCAATGCTCCAAGCAATTTGAGAGAGTTAAGGTCTTTGCTTGATAATCGGTTGGATGATCAGATAGTTGAAGCAATTGGTCGTATTCGAGCATGCAATGCTATTAGCTTGGCTGCAGAGAATCGTCATAAAATGCAAGTATTCTATGGTGTTTTGGTGCAGTATTTTGCTGTTCTTGGAGATGAAAAGCCACTAAGATTAAATAAACTCAACTTATTTGTGAGGCCCCTTATAGAGATCAGCTTTGAAATACCATATTTTGCAGCCATTTGTGCACGGAAACATCTAATACGCATTCGGAACCAGTTGTGTGTGGATCTTAAGAACCCAGACAAGAGCAGCATGCTGGCCATCTGTGAAGACACTGTTGCTACTGCGACTTTGGTCACTGATATTTCCTTCTTCTGATTTCCGGCATGCTGTTATGACGCCTGCTGTTCTACTTATGTCAGAGTATCTTATGCGTTGCCCCATCAATTCAGGACGGGATGTTGCTATTGGAACATTCTTATGCTCCATGCTTCTCTCAGTTCACAAAGGTGCTCGAAGGTTTTGTCCCGAGGCTGTCAATTTTTTGCAGGCTCTGTTGATGTCAGCTTTAGATACTAACCAGAGCCTCAATAAGAGGGATGAAGTGAAATGCCCTTACCTTTTTGCTGGAGCATGAAGAGTATAGGCCTTGGCTGCATCTTTCAAGTGGGGTATCCGTTTTACCTCAACCTTTGGATTTCATTATGATCATGGAGACTAGTGATGACGTGCCTCTCTTTGACTCAAACTTATACAGGGTTGGCATACTTCTTTCTGTATCAGAAACGTTGAGAGGTTTTGTAAACATATATCATGACATTGTTTCGTTCCCTGAAGTATTTGCATCCTTTGTACCTCTATTGAATGAAATAGTCAAAGAAAATAAGATACCCGAGACTCTCCGATTGAAGATGACAAGCATTGCTTCTCTAATAAAGGGGAAAATTGATGAGCATGAAAAGCTACGGCAACCATTGAGGATGAGAATGAAGAAGCCCATGCCTATCAAGCAATTCAATCCAAGATTTGAAGAGAACTTTGTGCATGGGAAAGATTATGATCCTGACAGAGAAAGGGCACAGAGAAAGAAGTTGGAGCGCCAGATCAAGCAGGAGGCAAAGGGTGCTGCTCGTGAACTGCGCAAGGATAACTACTTTTTGCAGGAAGTGAAGGCAAGAGAAAGGGCTGTGGCAGAGGAGGAGAGAGCAGACAGGTATAAGAAAGCAATGGCTTTCTTACAGGAACAAGAATCTAATTTCAAATCTGGGCAATTAGGAAGAGGAAGAAAGAAAAGAAATTAGGGACAATGACATGGTCTTTACCAATGTCGCCAATAATCTGACAGGCCATTTAGCTTTGGAAGGGAGTTTTAGTTGAGGTTACATTGGCATGGAATCTCATAGAGGTTTTTGTAAAGCAGTCAATTGAGGGAGTTAAATTTGACTGTGTAAATGATCAGAGTAGTGAAACTGATGACAATGGCTTCCTCTCATTAGAGTGGTTAAAGTTACATCAAGCAATTTGCTTTTCCTCTTTGTTTAAGGTGATGGTTGGCAAATTTTTCATTGCAATGCCACCATGGAAATTTGTTATTGATTGTTCTGGTATTTGTAAAACATTTTTCAATTGGTAGTGATATCAATTATTTGTGAACTGGATCTGTATTAACATGGAGACCCAGGTTCAAAACCCCCTGCGAAATGTGAATGAGGTTCAGTATAAGTCCAAGGTGATTTGACAGCATAGAAACATACTGAAGCATGGCAGCTTAGCTGAAGGACAACTGCAAGTTACTAAAGTGACATTTGACAAAAAAGTACCTCGTGCATATCTAGATAACAGCATAAATGTAAAATATAAATTTACCTTTTAAGTGCTACCTGGTTTCAACATAATGTAAAACATGGATATAATGCAAGATTGGTTTAC

Ace file of the UniGene sp_v1.1_unigene2312

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nop14, nol14; NOP14 nucleolar protein homolog	-	-	3.0e-35	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	nucleolar protein involved in 40s ribosome biogenesis	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nop14-like protein	IPR007276	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA3

Fln msg:

Fln protein: MIMETSDDVPLFDSNLYRVGILLSVSETLRGFVNIYHDIVSFPEVFASFVPLLNEIVKENKIPETLRLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPMPIKQFNPRFEENFVHGKDYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKARERAVAEEERADRYKKAMAFLQEQESNFKSGQLGRGRKKRN*

Protein Length: 200

Fln nts: ATGGGAAGTCAGACAAAGCGAAAGAAAAGAATGCAACTATTCAAATGACAGTTGCAGCTGAGAAAATTGAAACTCTGCCCTATGTTATCAATGCTCCAAGCAATTTGAGAGAGTTAAGGTCTTTGCTTGATAATCGGTTGGATGATCAGATAGTTGAAGCAATTGGTCGTATTCGAGCATGCAATGCTATTAGCTTGGCTGCAGAGAATCGTCATAAAATGCAAGTATTCTATGGTGTTTTGGTGCAGTATTTTGCTGTTCTTGGAGATGAAAAGCCACTAAGATTAAATAAACTCAACTTATTTGTGAGGCCCCTTATAGAGATCAGCTTTGAAATACCATATTTTGCAGCCATTTGTGCACGGAAACATCTAATACGCATTCGGAACCAGTTGTGTGTGGATCTTAAGAACCCAGACAAGAGCAGCATGCTGGCCATCTGTGAAGACACTGTTGCTACTGCGACTTTGGTCACTGATATTTCCTTCTTCTGATTTCCGGCATGCTGTTATGACGCCTGCTGTTCTACTTATGTCAGAGTATCTTATGCGTTGCCCCATCAATTCAGGACGGGATGTTGCTATTGGAACATTCTTATGCTCCATGCTTCTCTCAGTTCACAAAGGTGCTCGAAGGTTTTGTCCCGAGGCTGTCAATTTTTTGCAGGCTCTGTTGATGTCAGCTTTAGATACTAACCAGAGCCTCAATAAGAGGGATGAAGTGAAATGCCCTTACCTTTTTGCTGGAGCATGAAGAGTATAGGCCTTGGCTGCATCTTTCAAGTGGGGTATCCGTTTTACCTCAACCTTTGGATTTCATT_-_ATGATCATGGAGACTAGTGATGACGTGCCTCTCTTTGACTCAAACTTATACAGGGTTGGCATACTTCTTTCTGTATCAGAAACGTTGAGAGGTTTTGTAAACATATATCATGACATTGTTTCGTTCCCTGAAGTATTTGCATCCTTTGTACCTCTATTGAATGAAATAGTCAAAGAAAATAAGATACCCGAGACTCTCCGATTGAAGATGACAAGCATTGCTTCTCTAATAAAGGGGAAAATTGATGAGCATGAAAAGCTACGGCAACCATTGAGGATGAGAATGAAGAAGCCCATGCCTATCAAGCAATTCAATCCAAGATTTGAAGAGAACTTTGTGCATGGGAAAGATTATGATCCTGACAGAGAAAGGGCACAGAGAAAGAAGTTGGAGCGCCAGATCAAGCAGGAGGCAAAGGGTGCTGCTCGTGAACTGCGCAAGGATAACTACTTTTTGCAGGAAGTGAAGGCAAGAGAAAGGGCTGTGGCAGAGGAGGAGAGAGCAGACAGGTATAAGAAAGCAATGGCTTTCTTACAGGAACAAGAATCTAATTTCAAATCTGGGCAATTAGGAAGAGGAAGAAAGAAAAGAAATTAG___GGACAATGACATGGTCTTTACCAATGTCGCCAATAATCTGACAGGCCATTTAGCTTTGGAAGGGAGTTTTAGTTGAGGTTACATTGGCATGGAATCTCATAGAGGTTTTTGTAAAGCAGTCAATTGAGGGAGTTAAATTTGACTGTGTAAATGATCAGAGTAGTGAAACTGATGACAATGGCTTCCTCTCATTAGAGTGGTTAAAGTTACATCAAGCAATTTGCTTTTCCTCTTTGTTTAAGGTGATGGTTGGCAAATTTTTCATTGCAATGCCACCATGGAAATTTGTTATTGATTGTTCTGGTATTTGTAAAACATTTTTCAATTGGTAGTGATATCAATTATTTGTGAACTGGATCTGTATTAACATGGAGACCCAGGTTCAAAACCCCCTGCGAAATGTGAATGAGGTTCAGTATAAGTCCAAGGTGATTTGACAGCATAGAAACATACTGAAGCATGGCAGCTTAGCTGAAGGACAACTGCAAGTTACTAAAGTGACATTTGACAAAAAAGTACCTCGTGCATATCTAGATAACAGCATAAATGTAAAATATAAATTTACCTTTTAAGTGCTACCTGGTTTCAACATAATGTAAAACATGGATATAATGCAAGATTGGTTTAC

Fln Alignment:

sp_v1.1_unigene2312___MIMETSDDVPLFDSNLYRVGILLSVSETLRGFVNIYHDIVSFPEVFASFVPLLNEIVKENKIPETLRLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPMPIKQFNPRFEENFVHGKDYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKXXXXXXXXXXXXXXYKKAMAFLQEQESNFKSGQL
B8LMA3______________MIMEASDDAPAFDSNIYRVGILLSVSETLRGFVNIYHDIISFPEVFTSFVPLLHEIVKENKIPESLQLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPVPIKQFNPRFEENFVHGKNYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKARERAVAEEERADKYRKAMAFLQEQESNFKSGQL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
435		60	40		1.0
436			40	60	1.0
511		60		40	1.0
535	20			80	0.995493
537	80		20		0.995493
538			20	80	0.995493
750		16	83		0.994512
1038	33		66		0.997452
1168		20	80		0.995493
1549			14	85	0.993533
1639	90		10		0.90298
1641		12		87	0.992554
1642	12			87	0.992554
1643		12	87		0.992554
1646	12			87	0.992554
1667			75	25	1.0
1668		12		87	0.992554
1677	14		85		0.993533
1686	14			85	0.993533
1723		16		83	0.994512
1807		12		87	0.992554
1839	61		38		1.0
1982	33			66	0.997452
1984	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain