SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2307

Length: 988 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2307

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	6.0e-09	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	atp binding	-	-	1.90822e-35	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D1

Fln msg: your sequence is shorter than subject: 279 - 347

Fln protein: LKRISMEERKANTPWKVRLKVAVGVAEALDYLHNGFSQSVIHGDVKSSNILLSEEFEPQLSDFGLARWAPTSSYITCSDVLGTFGLTGILLQNTLFMERLMRRRMCMHLVWSFLS**LEGSQLIQQVPRVKKA*LCGQDHSYRMGNMESLADKCLQNVYDTNEMHRMMLAATLCLRETSHYRPCMSRILKLLQGEDERTDWAWCQNTMIKDMDTSDEDDIVENQGGHDIQTHLTLAMLGVDDDTVSLSSTDHSVGILPTNNSLEDYGLHRCSNSSSFD*

Protein Length: 280

Fln nts: TTGAAGAGAATCTCCATGGAGGAGAGAAAAGCTAATACTCCTTGGAAAGTGCGATTAAAAGTGGCTGTAGGAGTTGCTGAAGCATTAGATTACTTGCATAATGGCTTTTCTCAATCTGTCATTCATGGAGATGTAAAGTCTTCCAATATCTTGCTTTCTGAAGAGTTTGAACCACAGTTGTCAGATTTTGGGCTAGCAAGGTGGGCACCAACATCTTCATATATCACTTGCAGCGATGTTTTAGGAACATTTGGTTTGACAGGTATCTTGCTCCAGAATACTTTGTTTATGGAAAGGTTAATGAGAAGACGGATGTGTATGCATTTGGTGTGGTCCTTCTTGAGCTAATAACTGGAAGGAAGCCAATTGATACAGCAAGTCCCAAGGGTCAAGAAAGCCTGATTATGTGGGCAAGACCACTCTTACAGGATGGGGAATATGGAAAGTCTTGCTGACAAATGTTTGCAAAATGTTTATGATACAAATGAAATGCATAGAATGATGCTTGCTGCTACGCTTTGTCTAAGGGAAACATCTCATTACCGTCCTTGCATGAGCCGAATTTTAAAACTACTACAAGGAGAAGATGAGAGGACTGACTGGGCGTGGTGCCAGAATACAATGATCAAGGATATGGATACTTCAGATGAGGACGACATTGTAGAAAATCAGGGGGGGCATGATATACAAACCCATCTCACCCTTGCTATGCTTGGGGTGGATGATGATACGGTATCACTTAGTAGCACAGATCATAGTGTGGGCATTTTGCCAACAAACAATTCTTTGGAAGATTACGGACTGCACCGATGTAGCAATTCATCAAGCTTTGATTAA___TTCAAGATTAAAAGAAGTGAGTTTTGTTGCCAGCAATACATTTGTTTATGGTTGCTTTATAAGTTTCCCATGGCCACAGTGGTTTCATATTCTTATATGGCCAGGAATGTGACGTATTATGCTAGACCTCAAAGAATAGCTGAGGATTGTA

Fln Alignment:

sp_v1.1_unigene2307___WKVRLKVAVGVAEALDYLHNGFSQSVIHGDVKSSNILLSEEFEPQLSDFGLARWAPTS-SYITCSDVLGTFGLTGILLQNTLFMERLMRRRMCMHLVWSFLS**LEGSQLIQQVPRVKKA*LCGQDHSYRMGNMESLADKCLQNVYDTNEMHRMMLAATLCLRETSHYRPCMSRILKLL-QGEDERTDWAWCQNTMIKDMDTSDEDDIVENQGG
D5A9D1______________WSIRYKVAIGTARGLHYLHKCCQRRIIHRDIKSSNVLLGKDFEPQISDFGLSKWLPRQWTHHSVTPIEGTFG----YLAPEYFLHGIVDEKTD---VFSFGVLLLEIISGRRPIDASEQNILSWAKPLMESGNIHELVDPQLRGQYDIHQMQRMVLTASLCVRHSAIWRPSMIEVLQLLIEGQSDELADCWKMSISLINEDDDDFWGFEESESG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
644	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain