SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2300

Length: 2038 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2300
ATGGGGAAATCAAGCCGTCGTGACCTTGGCTGTCACTCAATTCGCCCATTAGAATCGGTCAAGATCACCAACACCAAGATATGACTATCATCCTCGGGCAGGCAATGAGTTTCTGAAATTAGAAACGCTCAACATTAAATATAACCAGAAGACGAGCAATGAGTTTGGGTAATGACACAGCCATGGCTGCCCAGACTCCACCCAAAATTCCCTTGGAACTTTATAGACAAAATCGTTCCAAGCTCATTGCGGCCATGCGCCAGTACCTGCAATCCCAAGGTCTCCCCATTAATGGTGTCATCTTGCTGCAGGGAGGAGAGGAGCAGACGCAATATTGTAGCGACACTACCATTCTTTTCAGGCAAGAGAGTTACTTCGCATATTTATTTGGTGTGAAGGAGCCGGGCTTCTATGGAGCCATGGACATTTCAACTGGGAAAACATTTCTCTTTACCCCAAGATTAAGTGAAGACTATGCAGTTTGGATGGGGAAAATACACACCTTATCTGACCTGAAGGAAATGTATGAGGTGGATGAAGTTTATTACACCAATGAGATGGAAGACATTTTAAGGTCTCTTGCTACAGACAATGAAACTATGCTGTTATATCTCTTGCATGGCCTTAACACGGACAGCAATAAATTCTCTCAGCCTGCACAATTCAAGGGAATTGAAAATTTCAATACCAATCTTGATATTTTACGTCCTATTTTGACTGAATGCCGTGTATTCAAGTCACATTTGGAATTGAATCTCCTACGATATGTCAATGATGTGAGCTCAGCAGCTCATGTTGAGGTCATGCGAAGAACAAAAGTTGGGATGAAGGAGTATCAATTGGAAAGCACGTTCTTGCACTATGTGTATATGTTTGGTGGTTGTAGGCGTTGCTCCTATACTTGCATCTGTGCAACAGGGGAGAATAGTTCTGTTCTCCACTATGGACATGCTGGAGCTCCAAATGATAGGACACTAAAGGATGGTGACATGGCATTATTGGATATGGGTGCGGAGTACTATTTTTATGGTTCTGATATAACATGCTCATTCCCTGTTAACGGAAAATTCACCGATGACCAGCGAGTTGTGTATAATGCAGTTCTTGATGCTCACAAAGCCGTTATTTCCAAAATGAAGCCTGGTGTAAGCTGGGTGGAGATGCACAAGTTAGCAGAGAGCGTTATTATAAAGTCTTTGAAGGATGCCAACATTCTGTTAGGAACTGTAGAAGAGATGTTGGAAAAAAGACTAGGTGCAGTATTCATGCCTCATGGTCTTGGACATTTCCTTGGACTTGACACTCATGATCCAGGAGGTTATGTAAAGGGACTTGAGAGGCCTAAAGAACCAGGGCTGAGATCATTGCGAACAGTTCGTGTTCTTCAGGAAGGAATGTTTGTAACAGTTGAACCTGGATGCTACTTCATTGATGCAACGTTGGTTCCAGCAATGGTGAATCCAGACACATCATCCTTCTTTAACAAGCAACTTATTCTAAGGTTCCAGAAGGTTGGAGGAGTGCGGATTGAAAGTGATGTAATTGTCACTGCAACTGGATGTGAGAACATCACCAATGTTCCTCGTGAAACTTGGGAAATTGAAGCAGTCATGCGTGGTGAATCGTGGCCCCTTAAGCTTCCTGAAAATGCTTGAGTTTGTATTTCATAGCTCAACTTCCATTTTGAGTCATTAATCTGAATACATCCAGGCTCACAATGTTCAAGTGGACAATATATAATGTTCTTACAAATTATATTCCAGAATGTTTAAATTATTTTTTAGGGCTTTAAATTTCTTATTAAATATCTCAGACTCAATGGACAAGTCTCTACTGTCTCATTCATTTGTGTCAAGTATAGCAGTGGAGTTTGTTCTGAGCACAATATCGCTTAAAGCAGTAGCACATAAAGTGAAAACAAAGGTCGCATATACTTGGATAAAATTTAATGATTTCAATGGATGAATTATGTTACTGTAGTCAAACTATTATAATTATTATTTATTTGTATTGTTTTTGGAGGACTATCTCCTTTTCT

Ace file of the UniGene sp_v1.1_unigene2300

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	xaa-pro dipeptidase, putative (EC:3.4.13.9); K01271 X-Pro dipeptidase [EC:3.4.13.9]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	xaa-pro dipeptidase	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Xaa-Pro dipeptidase.	EC:3.4.13.9	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase M24, structural domain	IPR000994	-	0.0	80%
Blast2go	Aminopeptidase P N-terminal domain	IPR007865	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUB9

Fln msg:

Fln protein: MSLGNDTAMAAQTPPKIPLELYRQNRSKLIAAMRQYLQSQGLPINGVILLQGGEEQTQYCSDTTILFRQESYFAYLFGVKEPGFYGAMDISTGKTFLFTPRLSEDYAVWMGKIHTLSDLKEMYEVDEVYYTNEMEDILRSLATDNETMLLYLLHGLNTDSNKFSQPAQFKGIENFNTNLDILRPILTECRVFKSHLELNLLRYVNDVSSAAHVEVMRRTKVGMKEYQLESTFLHYVYMFGGCRRCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLDAHKAVISKMKPGVSWVEMHKLAESVIIKSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCYFIDATLVPAMVNPDTSSFFNKQLILRFQKVGGVRIESDVIVTATGCENITNVPRETWEIEAVMRGESWPLKLPENA*

Protein Length: 500

Fln nts: ATGGGGAAATCAAGCCGTCGTGACCTTGGCTGTCACTCAATTCGCCCATTAGAATCGGTCAAGATCACCAACACCAAGATATGACTATCATCCTCGGGCAGGCAATGAGTTTCTGAAATTAGAAACGCTCAACATTAAATATAACCAGAAGACGAGCA_-_ATGAGTTTGGGTAATGACACAGCCATGGCTGCCCAGACTCCACCCAAAATTCCCTTGGAACTTTATAGACAAAATCGTTCCAAGCTCATTGCGGCCATGCGCCAGTACCTGCAATCCCAAGGTCTCCCCATTAATGGTGTCATCTTGCTGCAGGGAGGAGAGGAGCAGACGCAATATTGTAGCGACACTACCATTCTTTTCAGGCAAGAGAGTTACTTCGCATATTTATTTGGTGTGAAGGAGCCGGGCTTCTATGGAGCCATGGACATTTCAACTGGGAAAACATTTCTCTTTACCCCAAGATTAAGTGAAGACTATGCAGTTTGGATGGGGAAAATACACACCTTATCTGACCTGAAGGAAATGTATGAGGTGGATGAAGTTTATTACACCAATGAGATGGAAGACATTTTAAGGTCTCTTGCTACAGACAATGAAACTATGCTGTTATATCTCTTGCATGGCCTTAACACGGACAGCAATAAATTCTCTCAGCCTGCACAATTCAAGGGAATTGAAAATTTCAATACCAATCTTGATATTTTACGTCCTATTTTGACTGAATGCCGTGTATTCAAGTCACATTTGGAATTGAATCTCCTACGATATGTCAATGATGTGAGCTCAGCAGCTCATGTTGAGGTCATGCGAAGAACAAAAGTTGGGATGAAGGAGTATCAATTGGAAAGCACGTTCTTGCACTATGTGTATATGTTTGGTGGTTGTAGGCGTTGCTCCTATACTTGCATCTGTGCAACAGGGGAGAATAGTTCTGTTCTCCACTATGGACATGCTGGAGCTCCAAATGATAGGACACTAAAGGATGGTGACATGGCATTATTGGATATGGGTGCGGAGTACTATTTTTATGGTTCTGATATAACATGCTCATTCCCTGTTAACGGAAAATTCACCGATGACCAGCGAGTTGTGTATAATGCAGTTCTTGATGCTCACAAAGCCGTTATTTCCAAAATGAAGCCTGGTGTAAGCTGGGTGGAGATGCACAAGTTAGCAGAGAGCGTTATTATAAAGTCTTTGAAGGATGCCAACATTCTGTTAGGAACTGTAGAAGAGATGTTGGAAAAAAGACTAGGTGCAGTATTCATGCCTCATGGTCTTGGACATTTCCTTGGACTTGACACTCATGATCCAGGAGGTTATGTAAAGGGACTTGAGAGGCCTAAAGAACCAGGGCTGAGATCATTGCGAACAGTTCGTGTTCTTCAGGAAGGAATGTTTGTAACAGTTGAACCTGGATGCTACTTCATTGATGCAACGTTGGTTCCAGCAATGGTGAATCCAGACACATCATCCTTCTTTAACAAGCAACTTATTCTAAGGTTCCAGAAGGTTGGAGGAGTGCGGATTGAAAGTGATGTAATTGTCACTGCAACTGGATGTGAGAACATCACCAATGTTCCTCGTGAAACTTGGGAAATTGAAGCAGTCATGCGTGGTGAATCGTGGCCCCTTAAGCTTCCTGAAAATGCTTGA___GTTTGTATTTCATAGCTCAACTTCCATTTTGAGTCATTAATCTGAATACATCCAGGCTCACAATGTTCAAGTGGACAATATATAATGTTCTTACAAATTATATTCCAGAATGTTTAAATTATTTTTTAGGGCTTTAAATTTCTTATTAAATATCTCAGACTCAATGGACAAGTCTCTACTGTCTCATTCATTTGTGTCAAGTATAGCAGTGGAGTTTGTTCTGAGCACAATATCGCTTAAAGCAGTAGCACATAAAGTGAAAACAAAGGTCGCATATACTTGGATAAAATTTAATGATTTCAATGGATGAATTATGTTACTGTAGTCAAACTATTATAATTATTATTTATTTGTATTGTTTTTGGAGGACTATCTCCTTTTCT

Fln Alignment:

sp_v1.1_unigene2300___MSLGNDTAMAAQTPPKIPLELYRQNRSKLIAAMRQYLQSQGLPINGVILLQGGEEQTQYCSDTTILFRQESYFAYLFGVKEPGFYGAMDISTGKTFLFTPRLSEDYAVWMGKIHTLSDLKEMYEVDEVYYTNEMEDILRSLATDNETMLLYLLHGLNTDSNKFSQPAQFKGIENFNTNLDILRPILTECRVFKSHLELNLLRYVNDVSSAAHVEVMRRTKVGMKEYQLESTFLHYVYMFGGCRRCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLDAHKAVISKMKPGVSWVEMHKLAESVIIKSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCYFIDATLVPAMVNPDTSSFFNKQLILRFQKVGGVRIESDVIVTATGCENITNVPRETWEIEAVMRGESWPLKL
A9NUB9______________MSLCNEKAMATHTPPRIPMELYRQNRSKLTAAMRQHLQAQGLPINGVVLLQGGEEQTRYCTDHLILFRQESYFAYLFGVKEPDFYGAMDISTGKAFLFTPRLSEDYAVWMGKIHTLSDLKEMYEVDEVYYTNEMEDILRSLATDNETVLLYLLHGLNTDSNKFSQPAQFKGIENFNTNLDILHPILTECRVSKSYLELNLLRYVNEVSSAAHVEVMRKTKVGMEEYQLESTFLHYVYMFGGCRHCSYTCICATGENSSVLHYGHAGAPNDRTLKDGDMALLDMGAEYYFYGSDITCSFPVNGKFTDDQRVVYNAVLGAHEAVISKMKPGVSWVDMHKLAESVIITSLKDANILLGTVEEMLEKRLGAVFMPHGLGHFLGLDTHDPGGYVKGLERPKEPGLRSLRTVRVLQEGMFVTVEPGCYFIDATLVPAMENPDTSCFFNKQVIARFQKFGGVRIESDVIVTATGCENLTNVPRETWEIEAVMRGESWPLKL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1094		20	80		0.995493
1634		84	5		0.999846
1694	7			92	0.999602
1695		92		7	0.999602
1801		18		81	0.999994
1806	18			81	0.999994
1895	14		85		0.999981
1931		81	18		0.999994
1978		16		83	0.994512
1986		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain