SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2297

Length: 1938 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2297

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LysM domain containing protein	-	-	2.0e-09	38%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	36%
Blast2go	hypothetical protein SELMODRAFT_421511 [Selaginella moellendorffii]	-	-	5.7286e-36	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8SFI2

Fln msg: your sequence is longer than subject: 341 - 291

Fln protein: MARDAYCLNALASLRSLEPLMSVGAHEAGPLHLFGGKLFNSRRLSRTTCRENRENVIQGRSRGFQEKPQGRSRENVKMWNSVKGSKFRASSFTYNTDEATTSVYHTVTEGQTLASIARQYDTSIEEIALMNRIEDIDMIQAGQLLIVPVHSKVLRWVPSRTMGLDEITRKDQNMMPDSSISIKPSTLPGFIISSPVSVQLVKATVPFLLLLPIVAFCIRALVYSVLSRMGEETYNQKSDKVNLIAQHEPKLTRWHGVLDGDSDTEVLHISSPVYNITDCEENPSKDAYEEIHQSYAELEPAYLKFLAESGLSMSGYWRGGVPSSAPEESVGNTTLDSFNN*

Protein Length: 342

Fln nts: ATGGGCGGATGCCATTCATTTCAGGATGTTTATCCAGCGCAACGACTCTTTCCCGACGCCGGGGAGTTTTACCGATGAATAACAGCAATTTTGTTCAGTGAACGTAAATATGGCACCAGCAACAAAATTAGAGGCATTCTAGTGTCCCATGAA_-_ATGGCGCGGGATGCTTATTGCTTGAACGCTTTAGCTAGTCTTCGAAGCCTCGAGCCATTAATGTCAGTGGGCGCACACGAGGCTGGACCGTTGCATCTTTTCGGAGGTAAGTTGTTCAATTCCCGTCGGCTTTCCCGGACAACCTGCCGAGAAAACAGAGAAAATGTCATCCAGGGTCGCAGCAGAGGGTTTCAGGAGAAGCCACAGGGACGCTCGCGAGAAAATGTTAAGATGTGGAATTCAGTAAAAGGTTCTAAATTTCGTGCCAGCTCATTTACTTACAATACTGATGAGGCTACCACTTCAGTTTATCATACTGTCACAGAGGGTCAGACTTTGGCATCAATTGCAAGGCAGTATGATACATCAATAGAGGAAATTGCTTTGATGAACCGCATTGAGGATATTGATATGATTCAAGCAGGTCAACTGTTAATTGTACCTGTGCATAGTAAGGTGTTGAGATGGGTTCCCAGTAGAACAATGGGCTTGGACGAAATTACACGAAAGGACCAAAATATGATGCCGGATTCATCTATTTCAATAAAACCTTCAACATTGCCTGGATTTATTATTTCATCCCCGGTCTCTGTACAATTGGTTAAGGCCACTGTGCCATTTCTGCTCCTGCTTCCCATTGTAGCATTTTGTATTAGAGCGTTGGTGTATTCAGTTCTTTCTAGAATGGGTGAAGAAACATATAATCAGAAATCCGACAAAGTAAATTTGATTGCACAACACGAGCCAAAACTTACAAGGTGGCATGGTGTTTTGGATGGAGATAGCGACACTGAGGTCTTGCACATCTCTTCACCTGTGTATAATATAACAGACTGTGAAGAAAATCCAAGTAAAGATGCCTACGAAGAGATACACCAATCCTATGCAGAACTTGAACCAGCATACTTGAAATTCCTAGCAGAAAGTGGGCTGAGTATGTCTGGTTACTGGAGGGGTGGAGTACCTTCCTCTGCTCCGGAGGAGAGTGTGGGAAACACAACACTTGATTCTTTCAACAATTGA___CTAAGTTCCCAGAAGCTTAGTTTGTGTGTGAAAGTGTATTATATATCGGCATAATGCTATCAAATTCAAAGGGGTGAAGATTTAGGATTGAAAAGAGCACCTGGAAAATGATGGCTGTAAAGGGTAATGTTTCAAACTGATGTCTTTTTCTTGAATTCTCTCCCGGTTTTAAAAAGATTCCCAAGTAATTTCAGAGTGATCAGCATGTATCTTGTCTATTCTTCTTTCTTTTCTTCTTGCTTAAATCCATTCTTCATTAATTATATTTTGTGAAAATAAAGCCTGAAAAACTCTTGGGAAGAGTTGGATTTGATCCCAGGTGCATTTCGTGTGCGTTTACAAGGTACCGTTAACTGAAAAGGGTCGTCTTGACTCCTTACTAAAGGAAATGTCTTTTTGGTTAACCAAAGGATGACTCGCTCTTCATGATACTTAGTTTGAGGTCTGAGATATTGAGAAGTACACCATATTAGCTGTTTCTGATGAGAATATAGCGAAACATTGTTTTCACTAGAATAGTGGCTGGCTTGAATATAAAGAGATCAATGAATCCTCACAATACGTCGATGTTTTGAAACAAGAGGAATGAGGAACGAAAATCATCAGAAAGCTGTATGGGCAGTAGATATGGTTTAATATCAGTGAATTAATACGTCACAATAACATGCGGGTTCTTTTGTCTAATTGTAGCAAATTCCCATCGATGTTTTGAAACAGAGGAATGAGGAACGAACATGATCGGAAAGAACTAGTATGGGCAGT

Fln Alignment:

sp_v1.1_unigene2297___PQGRSRENVKMWNSVKGSKFRASSFTYNTDEATTSVYHTVTEGQTLASIARQYDTSIEEIALMNRIEDIDMIQAGQLLIVPVHSKVLRWVPSRTMGLDEITRKDQNMMPDSSISIKPSTLPGFIISSPVSVQLVKATVPFLLLLPIVAFCIRALVYSVLSRMGEETYNQKSDKVNLIAQHEPKLTRWHGVLDGDSDTEVLHISSPVYNI----TDCEENPSKDAYEEIHQSYAELEPAYLKFLAESGLSMSGYWRGGVPSSA
D8SFI2______________PIGRRRENAGKISAVADKAGEATDRSV-THPVSFSICHNVQEGETLTSIARQYSTSVQTIALANKIDDIDLLQTGRVLLVPVQPRVFQKVAA--LVIQDTPSTSEEII--STVAQPRSPVPPWMVSG--FPNFVSFTAPLLLLVPVVLLGFRKLLQEAQNRIKVEVSRTQAEKELWDVQRRPRLHRWQRILDGDRESEVA-VPGDGQRLEGAESETEEQRKAREEEELRKSYAELEATYMQFLADSGLSRSGYWRGGMPSSS

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
355	10	90			0.90298
356		90		10	0.90298
357	90		10		0.90298
358		90	10		0.90298
359	90		10		0.90298
607	80		20		0.995493
648		80		20	0.995493
700	83		16		0.994512
701	83		16		0.994512
702	80		20		0.995493
752			20	80	0.995493
762		80		20	0.995493
896	83		16		0.999991
971		15		84	0.999986
1183			10	90	0.90298
1184	10	90			0.90298
1188			90	10	0.90298
1189	90			10	0.90298
1190	90		10		0.90298
1196		10	90		0.90298
1198		10		90	0.90298
1199	10			90	0.90298
1228		11		88	0.923564
1234		11		88	0.923564
1320		50		50	1.0
1357	33	66			0.997452
1393	25			75	0.996473
1395	25			75	0.996473
1396	25			75	0.996473
1494	75	25			0.996473
1536	75			25	0.996473
1549		50		50	1.0
1584	83			16	0.994512
1592		83		16	0.994512
1692	57		42		1.0
1814	25			75	0.996473
1840	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain