SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2282

Length: 2184 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2282
ATGGGGAACTCGGAGTGGAACCACACCATGATTAAAAACACTATCCTTTTGGGCACACAAATCCGCATTCAGACAGTATTTGCTCAGAGAGAAACATGTTGGGGGTTTTTCATTGCTGTTTGTTATGCACTGCAGAGTCTTTTCCAGGTTGATTGGCCCATTCTTTGTATAGAAATCTGTGAAAAGCTTGTAGAAGCTTGGCGTCTATCTTCAAGAGGTAGAGGTTTCATTTCAAGAATGCATACTTCTTCAGTGGAGTTTGGTAGACTGTACACATCATGCTGGATTGGAGTATGAAATAAGGTCGCATTCTTATTGTGCATGTTATTGCTTGAAGCCTGAAGGTAATTCATGGAAACAAAGACAAAATATTTGTGGCGGCCTGGTTTCCCTCGACTCGTTGAGATTGCTTCTTGTCACCAAAATAACAATTGATGCAGCGAGGCTTGTTTAAATTTTGAGAAGGGGTTGTAGCTATCACAAGAATCAAGAGTAAGGGAATATATTTTAGCTTTGAAAAAAGAACAGGTTTTGGAAGATGCAGATTGCATCAGAATCAAAGGAAAATAAACACAGTAAAGAAAGTGAAGCTTCATCCATTGGTGTGTACGAAAGATCAATTGCTGCTGCAATGGCATCGACTGAAAAGGCATTGCAGCAGAGTGAAGACTCGAGTACTGAAGAAAAAATGTCCATTTCACATATTGCAAAACGACCAAATTTGATAGTGGAAATACCTTCAAGAAGTCTGGATGATTCTATTCCCAGTGGCTTGAAAGTAAACTTACCACCAACTCCAGGTTCAACAAAGAGGACAAAAAGAGCCCTTATACCACGGCCAAGCTTCAAGAACAGGGCATCTACATCGGAGGGTGAAAAGACTGTTCTGCTCACCCCAATGGCTTCATCAGAATCACCACCACCTTATGAAGGAGATCGGATATGTCGTACTCAAAGATCACCTTCACTAACAAAAATGTTTGTGCCACTATCTGCGAAAAGAACATCATCCATGCCAGTCAGCCCGGATACAGATTTGTGTCTGTCAGCCCCTGAATCAGCTCATGGAGGACACATGGTTGAGACACGCGCTTCGACTAAACCAGTTGATCAAGGGAAAATTTTTCGCTCAAAATCAATGCCCTTAAATAATAAAACAACAATTTCGAGATCAGATTCTTCAGGTTCTTTTATCCGTGTGAGGCCCATTACTCCTCGTAAGACAGAAGCTCAAGCAGTCACCAGCCCTAAGGAAATTTCTGTCATAAATACTGGGACTGAAGATGATGCAGAGGACATTCCTGAAGAGGATGCAGTGTGCAGAATTTGTATGGTCGAACTTTGTGAAGGGGGTGAAACTCTTAAAATGGAATGTAGCTGCAAAGGGGAACTTGCGCTTGCACATGAAGAATGTGCAATTAAATGGTTTAGCATAAAGGGAAACAAAACTTGTGATGTCTGCAAGCAGGAAGTTCAAAATCTACCAGTGTCATTGTTAAGAGTGCAGACTGTTTCCACTGCCAATACACAGCCTCAGCATGTGGAGGTACAAAGATACAGGCTGTGGCAGGATGTACCAGTTCTTGTCATGATCAGTATGCTGGCATATTTCTGTTTTCTTGAACAGCTTCTGGTTAGCAAAATGGCTTCTGCTGCTCTTGCTGTTGCTTTACCGTTTGCATGCATATTGGGCCTCCTCGCATCAATCACATCATCGACCATGGTTGACAAACGGTATATTTGGGTATATGCTTCAGTTCAATTTGCACTCGTACTCCTCTTTGCGCATGTGTTCTACTCAGTGCTCCATGTGGAGCCTGTTCTGGCAGTACTCCTTTCATCATTTGCTGGCTTTGGGATTGCAATGAGTGGAAATTCGTTACTTCTGGAATACTTAAGATGGAAAGAGAGGGTGCACAGATTGCGAAATAGGTCACGGAATACTCAGACAGCACAACCACCTGATCAGGCTAGAGGAAATACAAGCAACAATCAAACAGTTCCAAGTGAACCAATTAATGAACAACATGAACATGACATTGAAAGCTTGACTCCTGCCCAGAGTACCATGCCTGGTTCCTAAAGGACCCCTCAGATATAATGTGATTGATTCATGATCTTCTGTTTCAAGACATCAGCTTGAAAGGAAGGCTTATAATCTATTTTGAAGTTAGGAGAATAACA

Ace file of the UniGene sp_v1.1_unigene2282

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] ref\|NP_851231.1\| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] dbj\|BAB08241.1\| unnamed protein product [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein binding	-	-	64%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-CH-type	IPR011016	-	64%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	64%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA07

Fln msg: your sequence is longer than subject: 515 - 241

Fln protein: MQIASESKENKHSKESEASSIGVYERSIAAAMASTEKALQQSEDSSTEEKMSISHIAKRPNLIVEIPSRSLDDSIPSGLKVNLPPTPGSTKRTKRALIPRPSFKNRASTSEGEKTVLLTPMASSESPPPYEGDRICRTQRSPSLTKMFVPLSAKRTSSMPVSPDTDLCLSAPESAHGGHMVETRASTKPVDQGKIFRSKSMPLNNKTTISRSDSSGSFIRVRPITPRKTEAQAVTSPKEISVINTGTEDDAEDIPEEDAVCRICMVELCEGGETLKMECSCKGELALAHEECAIKWFSIKGNKTCDVCKQEVQNLPVSLLRVQTVSTANTQPQHVEVQRYRLWQDVPVLVMISMLAYFCFLEQLLVSKMASAALAVALPFACILGLLASITSSTMVDKRYIWVYASVQFALVLLFAHVFYSVLHVEPVLAVLLSSFAGFGIAMSGNSLLLEYLRWKERVHRLRNRSRNTQTAQPPDQARGNTSNNQTVPSEPINEQHEHDIESLTPAQSTMPGS*

Protein Length: 516

Fln nts: ATGGGGAACTCGGAGTGGAACCACACCATGATTAAAAACACTATCCTTTTGGGCACACAAATCCGCATTCAGACAGTATTTGCTCAGAGAGAAACATGTTGGGGGTTTTTCATTGCTGTTTGTTATGCACTGCAGAGTCTTTTCCAGGTTGATTGGCCCATTCTTTGTATAGAAATCTGTGAAAAGCTTGTAGAAGCTTGGCGTCTATCTTCAAGAGGTAGAGGTTTCATTTCAAGAATGCATACTTCTTCAGTGGAGTTTGGTAGACTGTACACATCATGCTGGATTGGAGTATGAAATAAGGTCGCATTCTTATTGTGCATGTTATTGCTTGAAGCCTGAAGGTAATTCATGGAAACAAAGACAAAATATTTGTGGCGGCCTGGTTTCCCTCGACTCGTTGAGATTGCTTCTTGTCACCAAAATAACAATTGATGCAGCGAGGCTTGTTTAAATTTTGAGAAGGGGTTGTAGCTATCACAAGAATCAAGAGTAAGGGAATATATTTTAGCTTTGAAAAAAGAACAGGTTTTGGAAG_-_ATGCAGATTGCATCAGAATCAAAGGAAAATAAACACAGTAAAGAAAGTGAAGCTTCATCCATTGGTGTGTACGAAAGATCAATTGCTGCTGCAATGGCATCGACTGAAAAGGCATTGCAGCAGAGTGAAGACTCGAGTACTGAAGAAAAAATGTCCATTTCACATATTGCAAAACGACCAAATTTGATAGTGGAAATACCTTCAAGAAGTCTGGATGATTCTATTCCCAGTGGCTTGAAAGTAAACTTACCACCAACTCCAGGTTCAACAAAGAGGACAAAAAGAGCCCTTATACCACGGCCAAGCTTCAAGAACAGGGCATCTACATCGGAGGGTGAAAAGACTGTTCTGCTCACCCCAATGGCTTCATCAGAATCACCACCACCTTATGAAGGAGATCGGATATGTCGTACTCAAAGATCACCTTCACTAACAAAAATGTTTGTGCCACTATCTGCGAAAAGAACATCATCCATGCCAGTCAGCCCGGATACAGATTTGTGTCTGTCAGCCCCTGAATCAGCTCATGGAGGACACATGGTTGAGACACGCGCTTCGACTAAACCAGTTGATCAAGGGAAAATTTTTCGCTCAAAATCAATGCCCTTAAATAATAAAACAACAATTTCGAGATCAGATTCTTCAGGTTCTTTTATCCGTGTGAGGCCCATTACTCCTCGTAAGACAGAAGCTCAAGCAGTCACCAGCCCTAAGGAAATTTCTGTCATAAATACTGGGACTGAAGATGATGCAGAGGACATTCCTGAAGAGGATGCAGTGTGCAGAATTTGTATGGTCGAACTTTGTGAAGGGGGTGAAACTCTTAAAATGGAATGTAGCTGCAAAGGGGAACTTGCGCTTGCACATGAAGAATGTGCAATTAAATGGTTTAGCATAAAGGGAAACAAAACTTGTGATGTCTGCAAGCAGGAAGTTCAAAATCTACCAGTGTCATTGTTAAGAGTGCAGACTGTTTCCACTGCCAATACACAGCCTCAGCATGTGGAGGTACAAAGATACAGGCTGTGGCAGGATGTACCAGTTCTTGTCATGATCAGTATGCTGGCATATTTCTGTTTTCTTGAACAGCTTCTGGTTAGCAAAATGGCTTCTGCTGCTCTTGCTGTTGCTTTACCGTTTGCATGCATATTGGGCCTCCTCGCATCAATCACATCATCGACCATGGTTGACAAACGGTATATTTGGGTATATGCTTCAGTTCAATTTGCACTCGTACTCCTCTTTGCGCATGTGTTCTACTCAGTGCTCCATGTGGAGCCTGTTCTGGCAGTACTCCTTTCATCATTTGCTGGCTTTGGGATTGCAATGAGTGGAAATTCGTTACTTCTGGAATACTTAAGATGGAAAGAGAGGGTGCACAGATTGCGAAATAGGTCACGGAATACTCAGACAGCACAACCACCTGATCAGGCTAGAGGAAATACAAGCAACAATCAAACAGTTCCAAGTGAACCAATTAATGAACAACATGAACATGACATTGAAAGCTTGACTCCTGCCCAGAGTACCATGCCTGGTTCCTAA___AGGACCCCTCAGATATAATGTGATTGATTCATGATCTTCTGTTTCAAGACATCAGCTTGAAAGGAAGGCTTATAATCTATTTTGAAGTTAGGAGAATAACA

Fln Alignment:

sp_v1.1_unigene2282___CRICMVEL---CEGGETLKMECSCKGELALAHEECAIKWFSIKGNKTCDVCKQEVQNL
D5AA07______________CRICHLTLETNPEAGASIVLGCSCKDDLAAAHKQCAEAWFKIKGNRTCEICGSIARNV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
960	40		60		1.0
961	40			60	1.0
962	40	60			1.0
966		40	60		1.0
968		60		40	1.0
969		40		60	1.0
972		40	60		1.0
973	40		60		1.0
976	40		60		1.0
977	40			60	1.0
980	40	60			1.0
981	40			60	1.0
982	40	60			1.0
1211		80		20	0.995493
1443	75		25		0.996473
1711	83			16	0.994512
1858	20	80			0.995493
1860			20	80	0.995493
1861			20	80	0.995493
2118			16	83	0.994512
2128	20			80	0.995493
2129		80	20		0.995493
2131	20		80		0.995493
2134		20		80	0.995493
2136	80		20		0.995493
2137	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain