SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2274

Length: 2005 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2274
CGTCGTGACCTTGGCTGTCATGGGGAGGCGAGCGCAATATTACTCGTCTTCTGCAGATCAGTTTTTTCATTCAGTCTTATCTCTGGTGTTAGTAATTCAGCCTTTTGTGTATAAAGTAAATTTATATATCAGCTACCTGGCTGTCCATATCCTAGAAAGAATACATTAAAACAATGATCCTTTCACCACCCTCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAAGGGTACTTTGCCTTGCAGAATCACACTAGTCTCACAAATATGGAGAAGAATGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATATGCCCATGGAGCTCCTTATGGGTATACTTAGGCTTGTTGATGATCGTACTGTAATTATTGGATCCGGTGTATGTACTGGCTGGAGGGAGGCAATCTGCATTGGTGTTCAGGAACTTTCTTTATCATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGCACTGTCATGATTTGCGTGCTCTAGACCTTTCCAACAGTACTCAGCTGACAGATACATCTATTGATGCTCTGGCGCGTGGTTGTAATCAACTTGAAAAACTTAATATTAGTGGATGTTCAAAGGTTACTGATTCAGCACTGATATTTCTGGCAGCGAAGTGCTGCAGATTGAGACATCTTAATCTTTGTGGTTGTTGTCAAGCTGCATCTGACAGGGCTTTGCTGGCTCTGGCACAAAATTGCCGCGGCTTGCAATCTTTGAATTTGGGTTGGTGTGAGAGGGTGACTGATGTGGGTGTGACAGGTTTGGCACAAGGTTGTCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCCTCGCTTAAGGTCATTGGGATTGTACTACTGCCAAAATATCACAGACTATGCTATGTACTCTTTAGTAAATAGCAGCATATACGGGACAGGGAAGGAAAACTCCAAACAGAAGAGCAGTAATATCAGATACAACACTGAGCCAGTATCCACCCAAGGCAGTCAAAGATGCAGGCGGAGTAATGGAGGTAGACAGAGTTGCGGCATCAGTGAACGCAATGCAGCTGCTAGTCGTGATTACATGGAATCTGTTTTGAGTGACGAAGAGGGGTATGGTCTAGTGCAGTTAAATATTAGCCAATGCACATTCTTATCTGCTCCTGCTGTTCAAGCTGTTTGTGATACTTTCCCAGCATTGCATACTTGTCCAGAGAAGCACTCCCTCATCATAAGTGGCTGCCTAAACCTTACCTCAGTGCATTGTGTGTGTGCAATTGAAGCTCAGAGAGAACGAAGAAGCAGAGCGGCAGCTTCTGCTTTTCCTGCAGGGATTCTAAATGCAAGAGCAATACGTTGAATTTAGCAAGCATTCCTAGATTGTATCTAGTTTGCAGGCTGCATGATATGGCTTGTATTGAATCTTAGTCTAGATTTCTTACGGATAAGTTATGGGATGTGAATATCAGGGAAAGTTATCGTAAGGTTAAGAAGAGTTATTTTGAGCATTTTTAGGAGTTGAAAAATATGTTACATTTTATCCATGGGTAGGAAAAAACATGTTACATTTTCTCCATGGTTTCAGTTTGTATACATGTTTCCCAGTTCTACTCTAATTACCTGGAGATGGGATATACTGTTATTTTGCCATGGTTTCAGTTTGTAAATATCTTCTGGTATTCTTCTCAGTTTCCTGGAGTTGGGTATACTCTTAATGACTAACATGGATTTCAATGTTTCGACTTTCAAGTGCCATCCTGCGCTAAAAACAATTCGAATGCTGTCACAGTATGAACTAGGATCTATATTTGTTAAAAGTTAAAACCTGTGACATTATGAAATGGGTGTCTATAATAAATATAGTGAAGTCCTCAA

Ace file of the UniGene sp_v1.1_unigene2274

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FBL2; F-box protein FBL2	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	f-box protein fbl2	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cell division	GO:0051781	Biological Process	69%
Blast2go	heat acclimation	GO:0010286	Biological Process	69%
Blast2go	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031146	Biological Process	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVF7

Fln msg:

Fln protein: MILSPPSTLDAMDLEVTKQEGYFALQNHTSLTNMEKNENADGNEDSKWQDMPMELLMGILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKSNMSKLLLSIAPKFTRLQSLNLRQNQHQLDDQAVEMVAKHCHDLRALDLSNSTQLTDTSIDALARGCNQLEKLNISGCSKVTDSALIFLAAKCCRLRHLNLCGCCQAASDRALLALAQNCRGLQSLNLGWCERVTDVGVTGLAQGCPEMRAVDLCGCVLITDKSVVALAENCPRLRSLGLYYCQNITDYAMYSLVNSSIYGTGKENSKQKSSNIRYNTEPVSTQGSQRCRRSNGGRQSCGISERNAAASRDYMESVLSDEEGYGLVQLNISQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCAIEAQRERRSRAAASAFPAGILNARAIR*

Protein Length: 440

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGAGGCGAGCGCAATATTACTCGTCTTCTGCAGATCAGTTTTTTCATTCAGTCTTATCTCTGGTGTTAGTAATTCAGCCTTTTGTGTATAAAGTAAATTTATATATCAGCTACCTGGCTGTCCATATCCTAGAAAGAATACATTAAAACA_-_ATGATCCTTTCACCACCCTCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAAGGGTACTTTGCCTTGCAGAATCACACTAGTCTCACAAATATGGAGAAGAATGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATATGCCCATGGAGCTCCTTATGGGTATACTTAGGCTTGTTGATGATCGTACTGTAATTATTGGATCCGGTGTATGTACTGGCTGGAGGGAGGCAATCTGCATTGGTGTTCAGGAACTTTCTTTATCATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGCACTGTCATGATTTGCGTGCTCTAGACCTTTCCAACAGTACTCAGCTGACAGATACATCTATTGATGCTCTGGCGCGTGGTTGTAATCAACTTGAAAAACTTAATATTAGTGGATGTTCAAAGGTTACTGATTCAGCACTGATATTTCTGGCAGCGAAGTGCTGCAGATTGAGACATCTTAATCTTTGTGGTTGTTGTCAAGCTGCATCTGACAGGGCTTTGCTGGCTCTGGCACAAAATTGCCGCGGCTTGCAATCTTTGAATTTGGGTTGGTGTGAGAGGGTGACTGATGTGGGTGTGACAGGTTTGGCACAAGGTTGTCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCCTCGCTTAAGGTCATTGGGATTGTACTACTGCCAAAATATCACAGACTATGCTATGTACTCTTTAGTAAATAGCAGCATATACGGGACAGGGAAGGAAAACTCCAAACAGAAGAGCAGTAATATCAGATACAACACTGAGCCAGTATCCACCCAAGGCAGTCAAAGATGCAGGCGGAGTAATGGAGGTAGACAGAGTTGCGGCATCAGTGAACGCAATGCAGCTGCTAGTCGTGATTACATGGAATCTGTTTTGAGTGACGAAGAGGGGTATGGTCTAGTGCAGTTAAATATTAGCCAATGCACATTCTTATCTGCTCCTGCTGTTCAAGCTGTTTGTGATACTTTCCCAGCATTGCATACTTGTCCAGAGAAGCACTCCCTCATCATAAGTGGCTGCCTAAACCTTACCTCAGTGCATTGTGTGTGTGCAATTGAAGCTCAGAGAGAACGAAGAAGCAGAGCGGCAGCTTCTGCTTTTCCTGCAGGGATTCTAAATGCAAGAGCAATACGTTGA___ATTTAGCAAGCATTCCTAGATTGTATCTAGTTTGCAGGCTGCATGATATGGCTTGTATTGAATCTTAGTCTAGATTTCTTACGGATAAGTTATGGGATGTGAATATCAGGGAAAGTTATCGTAAGGTTAAGAAGAGTTATTTTGAGCATTTTTAGGAGTTGAAAAATATGTTACATTTTATCCATGGGTAGGAAAAAACATGTTACATTTTCTCCATGGTTTCAGTTTGTATACATGTTTCCCAGTTCTACTCTAATTACCTGGAGATGGGATATACTGTTATTTTGCCATGGTTTCAGTTTGTAAATATCTTCTGGTATTCTTCTCAGTTTCCTGGAGTTGGGTATACTCTTAATGACTAACATGGATTTCAATGTTTCGACTTTCAAGTGCCATCCTGCGCTAAAAACAATTCGAATGCTGTCACAGTATGAACTAGGATCTATATTTGTTAAAAGTTAAAACCTGTGACATTATGAAATGGGTGTCTATAATAAATATAGTGAAGTCCTCAA

Fln Alignment:

sp_v1.1_unigene2274___MILSPPSTLDAMDLEVTKQEGYFALQNHTSLTNMEKNENADGNEDSKWQDMPMELLMGILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKSNMSKLLLSIAPKFTRLQSLNLRQNQHQLDDQAVEMVAKHCHDLRALDLSNSTQLTDTSIDALARGCNQLEKLNISGCSKVTDSALIFLAAKCCRLRHLNLCGCCQAASDRALLALAQNCRGLQSLNLGWCERVTDVGVTGLAQGCPEMRAVDLCGCVLITDKSVVALAENCPRLRSLGLYYCQNITDYAMYSLVNSSIYGTGKENSKQKSSNIRYNTEPVSTQGSQRCRRSNGGRQSCGISERNAAASRDYMESVLSDEEGYGLVQLNISQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCXXXXXXXXXXXXXXXXFPAGILNARAIR
A9NVF7______________MILSPPSTLDAMDLEVTKQEWNFSLQNHTSVTNMEKNETADGNEDSKWKDLPMELLMRILRLVDDRTVIIGSGVCTGWREAICIGVQELSLSWCKLNMSKLLLSIAPKFARLQSLNLRQNQHQLDDQAVEMVAKYCHDLRALDLSNSTQLTDTSIDALARGCNHLEKLNISGCSKVTDSALIFLAAKCNRLRHLNLCGCCPAASDRALLALAQNCCGLQSLNLGWCDRVTDVGVTGLAQGCPEMRAVDLCSCVLITDKSVVALAENCPRLRSLGLYYCQNITDTAMYSLVNSSIYGAGKENSKHKSSNIRYNTEPVSIQGSQRCRRSNGGRQSCGISERIVAASRDYMETVLSDQEGYGLVQLNVSQCTFLSAPAVQAVCDTFPALHTCPEKHSLIISGCLNLTSVHCVCAIEAQRERKSRAAASDYPAGILNARAIR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
424		10		90	0.90298
454		12	87		0.992554
456	87	12			0.992554
457	87			12	0.992554
459			11	88	0.923564
725	10		90		0.90298
823	11		88		0.923564
1097		14		85	0.993533
1196	87		12		0.992554
1516	4			95	0.994598

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain