SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2248

Length: 1770 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2248

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 5NG4 n=1 Tax=Pinus taeda RepID=5NG4_PINTA	-	-	91%
FL-Next	sp=Auxin-induced protein 5NG4; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	nodulin-like protein 5ng4	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	cell cortex	GO:0005938	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q6J163

Fln msg:

Fln protein: MASNIMQRCNVFMSERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITANQGFYLLGLYYTSPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGILGAILIIIGLYLVLWGKSEEKRLGLLQAKLSMVPENQPDNMDQSATLIINNSNGIKPNTSSSLTQPLLLDTSYKTVNIPSPSDEPQP*

Protein Length: 412

Fln nts: AGTCTGTGTAGAAGTTATGGGGAAAGCCATTCTCTTGTAGCACAGGTTATAACAGCCCTTTGTGCTAGGAGATCAGTTGGATCAGTTTGTATCCAAGCCAGTCCAAGAAGTCTAGCCCTGCAAGCTCAAGAGGTCCATAGTCATCGAG_-_ATGGCTAGTAACATTATGCAGAGGTGTAATGTTTTTATGTCTGAGAGAGTGAAGCTGCATGCAGCCATGCTTGCTCTTCAATTCGGCTACGCTGGATTCCATATCGTTTCCAGAGCAGCTCTGAATATGGGAGTAAGCAAGGTGGTGTTCCCAGTGTATAGAAACATCCTTGCCTTGATGTTGATTGGCCCGTGTGCTTATTTTCTGGAGAAGAAGGAGCGTCCAGCTCTTACGTTATCTTTCTTGATTCAGTTTTTCCTTCTTGCACTCTGTGGGATAACGGCCAATCAAGGATTTTATCTCTTAGGATTGTACTACACATCCCCAACTTTTGCTTCAGCCATACAAAACTCGGTGCCTGCAATTACTTTTATAATGGCAGCAGCTCTTAGGTTGGAGAAAGTCCATATTAGCAGGAGAGATGGTTTGGCCAAAATAATAGGGACTGTAGCCTGTGTAAGTGGTGCCACCATTATTACACTGTATAAAGGTCCTCCAATAACTCATATCTGGCGTCCAAATTTGGAAGTTACTGCTTCTTATTTTAAAGCATTCCAAGGTAATGATCTATCTGCAAAATCTGAGAACTGGACACTGGGGTGCATTTACCTACTTGGAAATTGTCTGGCATGGTCAGGCTGGATTGTTTTACAGGCACCAGTTCTAAAACGATACCCAGCACGTCTGTCAGTCACATCGTTTACTTGTTTTTTCGGAGTCATTCAGTTCTTAATCATTGCAGCTTTCTTCGAGACTGATCTGGAGCATTGGAAGATCCATTCTGGAGGAGAGCTTTTTACCATTCTATATGCAGGATTCGTTGCTTCTGGTATTGCCTTTTCAGTTCAGATATGGTGCATTGACAGAGGAGGGCCTGTGTTTGTTGCAGTCTACCAACCTGTACAAACTATTGCTGTTGCAATTATGGCATCTATCATTCTTGGGGAACAATTCTATCTGGGAGGGATACTTGGAGCAATTCTGATTATCATCGGTCTCTACCTTGTCCTGTGGGGCAAAAGTGAAGAAAAGAGATTGGGACTATTGCAGGCCAAATTGTCCATGGTGCCTGAGAACCAACCTGACAATATGGATCAGAGTGCAACTTTGATCATCAACAACAGCAATGGCATCAAGCCTAATACGTCCTCGTCCCTAACCCAGCCTCTTCTCCTTGACACCAGTTACAAGACTGTTAATATCCCTTCTCCTTCAGACGAGCCACAGCCATAA___AAGCCATCAAACCCTCTAACCCATCACAACAATACAACAGCTTGTATCACTGCAAACAGTACTAATGAATTTTCATGGTCTAGCAAAATATCCATGCAAACATCTACAGATGTATGTATCCATCTTAAGCCACTAAACATGTGCTTAAGAGCTTATATTAATATTTGGTTTCTGCCTGTGAGCCTGTTATAACCATATCCACTGAAAGTAGGATTTTGTTTCCCTTCTTGTAATATATAGTAAGTGTAGATTTCTGTTTCCTTTATTTTCAAACGAGGCAGTAATATACCCTAATCTTATGATAGGGTTACAAAAGTTTTTGATTGACCACCATGCTGCTAGCAGCACACTTATATACTACGATACTACGAGTGTTATGTTCACCGAAG

Fln Alignment:

sp_v1.1_unigene2248___MASNIMQRCNVFMSERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITANQGFYLLGLYYTSPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYXXXXXXXXXXXXXXXXXXXXKSEEKRLGLLQAKLSMVPENQPDNMDQSATLIINNSNGIKPNTSSSLTQPLLLDTSYKTVNIPSPSDEPQP
Q6J163______________MASNIMQRCNVFMSERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLIINSSNGIKPNTSSSLTQPLLLDTSYKTVNIPSPSDEPQP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
49	12		12	75	0.975346
51			12	87	0.992554
191		10		90	0.90298
381	88		11		0.923564
677	71			28	1.0
835	12			87	0.992554
921	90		10		0.90298
1089	14	85			0.993533
1091			14	85	0.993533
1552	16			83	0.994512
1554		83	16		0.994512
1555			16	83	0.994512
1592	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain