SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2238

Length: 1324 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2238 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	69%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome P450	IPR001128	-	69%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	69%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS63

Fln msg: your sequence is shorter than subject: 333 - 526

Fln protein: TLTSNIVWRILAGRKFSDDDLGGNFKGFKGLMTELTATVGEFNIGDFIPYLDWLDLQGIKRRMKKIHKTFDEFAEKIIDDHVNVNHLQKEAVDAEPHDEDFVDVLLHMAKDDTKITRETIKAVVLDLFGAGLDRISISLEWAMSELLRHPRAMKKLKEEIESVVGQHCKVEESDLANLKYLHCVVKETLRLYPAAPLAIPHESAETVTVGGYFIPKKTMLMVNVWAIGRDPKVWGADAAEFKPERFMEDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVQLALAQLLHTFDWRVDGDPSQLDMKEACGLTIPRKVALCAFPKLNSSFPT*

Protein Length: 334

Fln nts: CCACTCTCACCTCCAATATTGTTTGGCGAATACTGGCGGGGAGGAAATTTTCTGACGATGATTTGGGTGGCAATTTCAAAGGGTTTAAAGGCCTGATGACAGAGTTGACAGCTACAGTGGGAGAGTTCAACATTGGGGACTTCATTCCGTATTTGGATTGGCTCGATTTGCAAGGTATCAAGCGCCGCATGAAGAAAATTCATAAAACATTCGATGAATTTGCGGAGAAAATAATAGACGACCATGTTAATGTGAATCATCTCCAGAAAGAGGCCGTAGACGCGGAGCCTCATGATGAAGACTTCGTGGATGTACTGCTCCACATGGCTAAGGACGACACCAAAATTACACGGGAAACCATCAAGGCTGTTGTGCTTGACTTGTTCGGCGCTGGCTTGGATAGAATATCAATTTCGTTAGAATGGGCAATGAGCGAGCTGCTCAGACATCCCCGTGCAATGAAGAAATTAAAAGAGGAAATCGAATCGGTCGTTGGCCAACATTGCAAAGTTGAGGAGTCCGATCTAGCAAACCTGAAATACCTCCACTGTGTGGTGAAAGAGACTCTGCGACTATACCCAGCGGCGCCCTTAGCGATTCCTCATGAATCTGCAGAGACTGTGACAGTAGGAGGATACTTTATCCCTAAGAAAACAATGTTGATGGTGAATGTCTGGGCTATCGGAAGGGATCCTAAGGTGTGGGGTGCAGATGCTGCTGAATTTAAGCCGGAGAGATTCATGGAAGACGAACATGTCAATGTCACAGATCCATCAAATTTCAATATGATACCGTTCGGCGCAGGAAGGAGAGGATGCCCAGGGGCATCGATGGCTATTCCTACGGTTCAGCTTGCATTGGCTCAGTTGTTACACACTTTTGATTGGAGAGTGGACGGTGATCCGTCCCAGTTGGATATGAAGGAAGCATGTGGATTAACCATTCCACGGAAAGTTGCGCTCTGTGCTTTTCCAAAGTTGAACAGCAGCTTTCCAACGTAA___TACCTGGGAGGATACAAGCGACGATGCCTTTTCTTCGTTTTTCTCCGTTGGTGATGGTTTTTCTGTTTCAATAATACAGAAATCTCTAGAATATTCTCCTAATCAGTTATGTGCAGTTAAAACTGCTATATGTTGTTAAAATCGTTTGTCTTAATTAGACTTCGTTGGTTGTCAGTTCTTGTATTCTAAGAATCAGCTCAATCATAATATACTCTTATAGATGTAACCGTTTCGTCTTATAAGTGAATACAAGTGTAGTTGTGTACTCTTAAGAGAAAGTCACTTTCTCATAAGGGATCTGCATCCTTTGTTCAATTCCAAAA

Fln Alignment:

sp_v1.1_unigene2238___TLTSNIVWRILAGRKFSDDDLGGNFKGFKGLMTELTATVGEFNIGDFIPYLDWLDLQGIKRRMKKIHKTFDEFAEKIIDDHVNVNHLQKEA------VDAEPHDEDFVDVLLHMAKDDTKITRETIKAVVLDLFGAGLDRISISLEWAMSELLRHPRAMKKLKEEIESVVGQHCKVEESDLANLKYLHCVVKETLRLYPAAPLAIPHESAETVTVGGYFIPKKTMLMVNVWAIGRDPKVWGADAAEFKPERFMEDEHVNVTDPSNFNMIPFGAGRRGCPGASMAIPTVQLALAQLLHTFDWRVDGDPSQLDMKEACGLTIPRKVALCAFPKLNSSFP
C0PS63______________TLTSNIVWRILANRKFSDDDLGGDFKGFKDLLVELTARVGDFNIGDFIPYLDWLDLQGISRCMKKIHKTFDEFAEKIIDDHVNVNHLMAAASNGQKRADAEPHVQDFVDVLLHMAVTNTKITRKTIKALVLDMFAGGLETTSTTLEWAMSELLRHPNVMKRLQEEIDSIVGHHGKVKESDLATMKYLHCVVKETLRLYPAVPLAIPHESVEAVTVGGYYIPKKATVMVNVWAIGRDPNVWGAYASDFKPERFMENEHINLTDQSDFSMIPFGSGRRGCPGASMAIPTIELALAQLLHTFDWRVEGDPSRLDMKEACGLTIPRQVPLCAYPSLRVSFP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
79		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain