SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2226

Length: 1036 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2226

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to GRV2 (KATAMARI2); binding / heat shock protein binding; K09533 DnaJ homolog subfamily C member 13	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	heat shock protein binding	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	91%
Blast2go	response to starvation	GO:0042594	Biological Process	91%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	91%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	91%
Blast2go	amyloplast organization	GO:0009660	Biological Process	91%
Blast2go	cell division	GO:0051301	Biological Process	91%
Blast2go	negative gravitropism	GO:0009959	Biological Process	91%
Blast2go	vacuole organization	GO:0007033	Biological Process	91%
Blast2go	endosome organization	GO:0007032	Biological Process	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%
Blast2go	late endosome	GO:0005770	Cellular Component	91%
Blast2go	microsome	GO:0005792	Cellular Component	91%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	91%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
734		16		83	0.994512
735	83		16		0.994512
742	16			83	0.994512
745	80		20		0.995493
747	80	20			0.995493
751		20	80		0.995493
752	20		80		0.995493
755		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain