SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2215

Length: 1497 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2215 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ELM2 domain-containing protein / PHD finger family protein	-	-	5.0e-32	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	57%
Blast2go	Zinc finger, CW-type	IPR011124	-	57%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	57%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2P5

Fln msg: Distance to subject end: 18 aas,

Fln protein: MQLWGIQVLLVTAVSHYSVKYSGFSEDSTRTLICDICEEAFHMTCCSPKIKSVPVQDEWHCQYCKKKRKRREKKCLIASKNSQSILHESGSKSEKSAEDKADLFWRMLEDNQPYTTQVRIGKAFQADVPVWTGKVQDDAESLFLGEPLEMECAQQNLLNEVWSNCWQPVQSFFPGLIENWIQCQNVIEKGVPCPHGRKAKDVICGKWRRAPLLEVQNDDWDCSCAVVWDPVHSDCAVPQELTTEEILWRLKATEMAKLQLNN

Protein Length: 263

Fln nts: GAAAAAGTCCAGAAATTATGTCCGGAAGCAAAATAATTATGTATATAAACGCAGAAAGTTACAGAGAAATTCAGTAGCACTTCTGTCAGAACAAACCATATGGTTCCTCAAAAAGAATTCTTGCATAATGACAACATAAAATCTATCGTGGACACCTCAGGCAGCACAAATAGAAGATACCGGCAAGTGCAATGTTAATATTGAGCAGCATGATATAAGTGTATTGGCTAGCCCTTGTACAGGTTATCCAATGAATCTTCTGCAGTCGGGAAACAAGGTCATAAATAATAGTTTGGGTGGGCTTTTGCATACTGAAAAATATGAAACCTGTCTTGGAATGCATATTGATTGTAAGACAGCTGATAGTGAAGCCATTTCATTATGTCAGACAGGATCTTCAAATTTACATTTGGATTCCAAAACACCAGACATAAATGTTGTTGATGTTGGAGAGGTTACTTCAGGGAGCAGGTCAATCATTGAAGAGTCTACTAATTTTCAAATTCTAGGCAGTCCATCTTTCCAAATATCCAATTGTAATTTAAAACAGATTACGGTCTCCACTAAACAGGATGTAATTGATCTAACTGAGTGCACGTCTTCTAGTGATAATACACTACTTTCTCGAGAGAGTGACTGTGAGAAAGAGTGGTGCATTTCTGTTTTGGAGGAGTATGGATTGCTTGGTTGGTTTGTGTCTTCCGGGAGAGT_-_ATGCAGCTGTGGGGCATCCAGGTGTTGTTGGTGACGGCAGTTTCTCACTATTCTGTAAAATATAGTGGTTTTTCAGAAGATTCAACCAGAACTCTCATTTGTGATATCTGTGAGGAAGCCTTTCATATGACATGTTGTAGTCCTAAAATAAAATCAGTACCTGTTCAAGATGAATGGCATTGCCAATATTGCAAAAAGAAGAGGAAGAGAAGGGAAAAGAAGTGCCTTATTGCAAGCAAAAATTCTCAAAGTATCCTTCATGAAAGCGGTTCAAAATCAGAGAAATCTGCTGAAGATAAAGCTGATCTTTTCTGGCGTATGCTGGAAGATAATCAGCCATACACAACTCAGGTTCGAATTGGCAAGGCATTTCAGGCAGATGTTCCAGTCTGGACTGGCAAGGTTCAAGATGATGCAGAGAGCTTGTTTCTGGGAGAGCCCCTTGAAATGGAGTGTGCACAACAGAACTTGTTGAACGAAGTCTGGTCCAATTGTTGGCAACCTGTTCAGTCATTTTTTCCTGGCTTAATAGAAAACTGGATTCAGTGTCAGAATGTGATTGAGAAAGGAGTACCATGTCCACATGGACGGAAGGCAAAGGATGTAATTTGTGGCAAATGGCGCAGAGCTCCCCTCTTGGAAGTTCAAAATGATGATTGGGATTGCTCATGTGCAGTTGTCTGGGATCCTGTCCATTCAGATTGTGCAGTACCCCAGGAACTTACAACAGAAGAAATTTTATGGCGTTTGAAAGCAACTGAAATGGCAAAACTGCAACTTAACAAT

Fln Alignment:

sp_v1.1_unigene2215___ICEEAFHMTCCSPKIKSVPVQDEWHCQYCXXXXXXXXXKCLIASKNSQSILHESGSKSEKSAEDKADLFWRMLEDNQPYTTQVRIGKAFQADVPVWTGKVQDDAESLFLGEPLEMECAQQNLLNEVWSNCWQPVQSFFPGLIENWIQCQNVIEKGVPCPHGRKAKDVICGKWRRAPLLEVQNDDWDCSCAVVWDPVHSDCAVPQELTTEEILWRLKATEMAKLQLNN
A9P2P5______________MCEEAFHMSCCSPKIKSVPVQDEWHCQYCKKKRKKREKKCLIVSKSSQSILDESCSKSEKSAEDKADLFRRMLQDNQHYTTQVRIGKAFQADVPDWTGKVQDDAESLFLGEPLEMEGAQQNLMNELWSNGWQPVQSLFPGLVENWLQCQNVIEEGVPCPHGRKAKDVICGKWRRAPLLEVQNDDWDCSCAVVWDPVHSDCAVPQELATEEILWRLKATEMAKLQLNN

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
304	28		71		1.0
336		71		28	1.0
422		25		75	1.0
510	81		18		0.999994
561		12	87		0.992554
562		12	87		0.992554
679		16	83		0.994512
782			50	50	1.0
783		50	50		1.0
785			50	50	1.0
786	50			50	1.0
787		50	50		1.0
788	50			50	1.0
790	50			50	1.0
791		50	50		1.0
795	25		50		1.0
797	50		50		1.0
799	50			50	1.0
804	50		50		1.0
807		50	50		1.0
1125	11		88		0.923564
1132		11		88	0.923564
1169	16		83		0.994512
1205	75		25		0.996473
1286	83			16	0.994512
1325			16	83	0.994512
1328			16	83	0.994512
1332	16		83		0.994512
1334	16			83	0.994512
1339	16		83		0.994512
1344		16	83		0.994512
1345	33			66	1.0
1347	16	66	16		0.988813
1348	83		16		0.994512
1350		20	80		0.995493
1352	25			75	0.996473
1353	66		33		0.997452
1355	66			33	0.997452
1356		33		66	0.997452
1357	33			66	0.997452
1358		33		66	0.997452
1359			33	66	0.997452
1361		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain