SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2210

Length: 1355 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2210

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfite reductase n=2 Tax=Nicotiana RepID=C0JT31_NICBE	-	-	69%
FL-Next	sp=Ferredoxin--nitrite reductase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	27%
Blast2go	sulfite reductase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfite reductase.	EC:1.8.99.1	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	copper ion binding	GO:0005507	Molecular Function	82%
Blast2go	sulfite reductase activity	GO:0016002	Molecular Function	82%
Blast2go	stromule	GO:0010319	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	apoplast	GO:0048046	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like	IPR005117	-	82%
Blast2go	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	82%
Blast2go	Nitrite/sulphite reductase 4Fe-4S domain	IPR006067	-	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q42997

Fln msg: your sequence is shorter than subject: 270 - 596

Fln protein: WDGKYFYGVHVDNGRIKGATKKALRNLIEKYGLSVRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDPLNVTAMACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTQLAKPFIDKVKVQELEKVLEPLFYYWKRMRQSGESFGSFTERLGFDKLEEMVSKWKGMRASKHTLKVIAGKETYEALRKLAEAQGTDASELSAEILQNYVKEQRINGPT*

Protein Length: 271

Fln nts: ATGGGATGGCAAATATTTTTATGGAGTCCATGTTGATAATGGCCGGATTAAAGGTGCTACAAAAAAAGCATTGCGAAACTTGATTGAGAAGTACGGCTTAAGTGTCCGTCTTACCCCAAACCAGAACCTCATCTTGTGTGATATTCGCAATTACTGGAAAAGACATGTCACTAGTATTCTTTCTCAAGCTGGCTTACTGGATTCAAGTTATGTTGATCCTCTAAATGTGACAGCCATGGCATGCCCTGCCTTACCGTTATGTCCTCTTGCTATAACAGAGGCAGAACGTGGAAGTCCTGATATTATTAAAAGGGTCCGTGCTGTGTTTGAAAAGGTTGGGTTAAAGTACACGGATTCAATTGTGATAAGGTTCACTGGATGCCCTAATGGTTGTGCAAGACCGTACATGGCTGAGCTAGGCTTTGTGGGAGATGGACCGAACAGCTATCAGATTTGGCTTGGTGGGACACCTAACCAAACACAACTTGCAAAACCCTTCATAGACAAGGTCAAAGTGCAAGAATTGGAAAAAGTTCTGGAGCCTCTATTTTATTATTGGAAGAGAATGCGTCAGAGTGGAGAATCTTTTGGCAGCTTCACAGAAAGATTGGGTTTTGACAAGCTAGAAGAAATGGTGAGCAAATGGAAAGGTATGAGGGCATCCAAACACACCCTAAAAGTTATCGCTGGGAAGGAAACATATGAAGCCCTGAGAAAGCTTGCAGAAGCCCAAGGTACGGATGCAAGTGAGTTATCTGCGGAGATCCTTCAAAATTATGTGAAGGAGCAGAGAATAAACGGACCCACATAA___AGCAGTGACATTTCCCACATTACAGGGTGAACATAAAATGCTTTAATTTTACATCAACTGCCTTTCCTCTGAAATCTTTTTATGCTGATCAGATTAAGCTCAAGAAGCAGGATACGATCCTGGTTGACTGGTAATTTCCAACGATGATTGACATGATCTTTTTGTTGTGAGTTAGGGGGATGCATGGAAAGTTAGTTTTCTGCCGTTTCTGGTTTGCTGTTTTGGGTAAATTATTTGCCATCTAGGATTATGAATGTCTTTTTCAGCACATGCTGACCTAGTCTCCTTTCTGATGGAGAAATAAATGCAATCTAGTCACGTGTTATCGAAATTAGAATTTCATTACGAATCAAACTAATTATCAAGCACGATGAGACCTAATTCAGAAACTTTTCGCATGCATCCTGAGTTGGGACAAGTTTTCTACTTCGGTCACTAGAAGGGACGAGATACCCCAATCTCAGGATATAACGGGATTAGTACTATTTCTTTTGAGAATTATTAATTTCTTTCATGTAATTTCTTTTGAGAATTGTTAATTTCT

Fln Alignment:

sp_v1.1_unigene2210___DGKYFYGVHVDNGRIKGATKKALRNLIEKYGLS-VRLTPNQNLILCDIRNYWKRHVTSILSQAGLLDSSYVDPLNVTAM-ACPALPLCPLAITEAERGSPDIIKRVRAVFEKVGLKYTDSIVIRFTGCPNGCARPYMAELGFVG
Q42997______________EGMSYVGLHVPVGRVQAADMFELARLADEYGSGELRLTVEQNIVIPNVKN---EKVEALLSEPLLQKFSPQPSLLLKGLVACTGNQFCGQAIIETKQRALLVTSQVEKL-----VSVPRAVRMHWTGCPNSCGQVQVADIGFMG

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
319		37		62	1.0
350	88		11		0.923564
813	16		83		0.994512
814		83		16	0.994512
815	83		16		0.994512
817			16	83	0.994512
835	83		16		0.994512
1131	45		54		1.0
1140	54		45		1.0
1180		70		29	1.0
1206		68		27	1.0
1263	53		23		1.0
1264	7	7	15		0.999985
1272		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain