SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2209

Length: 2143 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene2209
CGTCGTGACCTTGGCTGTCACTCAATCTTGACGCCTGCGTGCGCTTTCTGTAATCTAGTTGTCGTGAGTATCGAGGGCAATATTATTGGAACGTGTTTCGAGAGACTACGGAATGCATGAGAATCAACCGGTCTTTAACATTAAAAGAATATCCCTGCGGATTACTATCAAATCAGGATAGAGTCGCATCCGCAGTGTGCACATCGAAAACCGGTTCAGGGTGGTAGAGGCTCTGGATACAGTTGTCCACCTTGTTTATATCAGTTTTTCTGTTGGCTGTCACTCAAAGTTATCGAACCAAACTGTACCGCATTGAAGAGGCGATACAGAATGCATCGATTGTTTGCTTGCCAGGCTTTGGCCAGCGTAGTGACGAGGTCCAGCAATCCCATTCGAATTAGTCGATCCAGATTTTCAACCTCTTTGCTGACCGACGAAACCCAAAAGCAGTTCAAAGAAAGTGTTGCACAATTTGCACAGGAGAATATTGCTCCCCATGCTGCTACACTGGATGCCACGAATTATTTTCCGAAGGAAGTAAATTTGTGGAAGCTTATGGGAGACTTCAATCTCCATGGGATCACTGTGCCTGTGGAATATGGAGGACTTGGATTGGGTTATTTGTATCATTGCCTTGCAATGGAAGAAATCAGTCGTGCTTCTGGGTCTGTTGGTCTTTCATATGGAGCACATTCAAATCTATGTATCAATCAATTGGTGAGGCATGGCTCTGCTGCTCAGAAGGAGAAGTACCTACCAAAGTTAATCAGTGGGGAACATGTTGGGGCGCTGGCAATGAGTGAGCCAAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAAGCTGATAGAGTAACTGGGGGTTATCGGATAAATGGAAACAAAATGTGGTGCACGAATGGACCAGTTGCAGAGACACTGATTATTTATGCAAAAACAGATCCAAATGCTGGATCAAAAGGAATCACAGTTTTCATCATTGAAAAGGGCATGGAAGGCTTCAGCACTGCTCAAAAGCTGGACAAGCTTGGGATGCGGGGTAGTGATACATGTGAACTGGTTTTTGAGAATTGCTTTGTCCCTGAAGAGAATGTACTAGGGAAAGAAGGCAAAGGAGTTTATGTTTTGATGTCAGGATTAGATTTGGAGAGATTAGTCCTGGCAGCAGGCCCCATTGGCTTAATGCAAGCATCAATGGATGTCGTTCTTCCATATGTTCGTCAAAGAGAACAGTTTGGTCGTCCAATTGGTGAATTTCAGCTGATACAGGGGAAACTGGCTGATATGTACACTGCTTTGCAGTCTTCTAGGGCCTTTGTTTATTCTGTCGCAAAGAAATGTGACAATGGCGATGTTGACAAGAAGGACTGTGCTGGGGTCATTCTTTTCGCTGCAGAAAATGCAACTCAAGTTGCTCTCCAGGCAATCCAATGTCTTGGTGGGAATGGATATGTGAATGAATATCCTACTGGTCGCCTTCTGCGGGATGCAAAATTGTTTGAAATTGGTGCTGGCACAAGTGAAATAAGAAGGATGTTAATTGGTCGTGCCCTGTTTCAAGAGCAATAGAGCTTATATTTTGCTGATGTTAGGTTGATTCTCTAGGCAGTTGAACAAAAATGGTAATTGGTCCCACATCTTCTATGGGATGCCAAATTGATCAATCGGTGTTGGTACAAGTGAAATAAGAAGGGGATGCTAATTGATGACGTCCATTTACAAAAGCAATAGAGTCAATATTAAGGTGATGCCATGTTGATCTTACGGCATTTGAACAAAATTTATCATTTGTAAGTAACAATATCTGTTTTTCTCCCTCTTTCATTTATAAGTGAAATGGCAGTGCCAACAGGCATTTACATGAAGAAATTCTTAATGTAAAAAATCTCAATGGTAATGATAAATCCATACCCATTGGTATTTGGAATCACTTTCAGAAGGAAGTCATTATTGTCAGGCAATAATATCAATCCCACAATTAAGGGGAGATCTCTAACCAAAATGTAACTAGAGTTTGTAGCATCATGTTAATACTCTTCCTTCAGAAACTATTGAAGTGGACCCAACAAACTTGATGGTTGCAGTGTTGTTTTTATTATATCTAATTTATTAAGAGAGTATGTCTAAACTGTATTAAATCCCA

Ace file of the UniGene sp_v1.1_unigene2209 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	isovaleryl-CoA dehydrogenase (EC:1.3.99.12)	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	isovaleryl- dehydrogenase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.3.99.1-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	isovaleryl-CoA dehydrogenase activity	GO:0008470	Molecular Function	0.0	92%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	92%
Blast2go	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	92%
Blast2go	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	92%
Blast2go	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	92%
Blast2go	Acyl-CoA dehydrogenase/oxidase C-terminal	IPR009075	-	92%
Blast2go	Acyl-CoA dehydrogenase/oxidase	IPR009100	-	92%
Blast2go	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPF0

Fln msg: your sequence is longer than subject: 413 - 227

Fln protein: MHRLFACQALASVVTRSSNPIRISRSRFSTSLLTDETQKQFKESVAQFAQENIAPHAATLDATNYFPKEVNLWKLMGDFNLHGITVPVEYGGLGLGYLYHCLAMEEISRASGSVGLSYGAHSNLCINQLVRHGSAAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKADRVTGGYRINGNKMWCTNGPVAETLIIYAKTDPNAGSKGITVFIIEKGMEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVLMSGLDLERLVLAAGPIGLMQASMDVVLPYVRQREQFGRPIGEFQLIQGKLADMYTALQSSRAFVYSVAKKCDNGDVDKKDCAGVILFAAENATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEIRRMLIGRALFQEQ*

Protein Length: 414

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTGACGCCTGCGTGCGCTTTCTGTAATCTAGTTGTCGTGAGTATCGAGGGCAATATTATTGGAACGTGTTTCGAGAGACTACGGAATGCATGAGAATCAACCGGTCTTTAACATTAAAAGAATATCCCTGCGGATTACTATCAAATCAGGATAGAGTCGCATCCGCAGTGTGCACATCGAAAACCGGTTCAGGGTGGTAGAGGCTCTGGATACAGTTGTCCACCTTGTTTATATCAGTTTTTCTGTTGGCTGTCACTCAAAGTTATCGAACCAAACTGTACCGCATTGAAGAGGCGATACAGA_-_ATGCATCGATTGTTTGCTTGCCAGGCTTTGGCCAGCGTAGTGACGAGGTCCAGCAATCCCATTCGAATTAGTCGATCCAGATTTTCAACCTCTTTGCTGACCGACGAAACCCAAAAGCAGTTCAAAGAAAGTGTTGCACAATTTGCACAGGAGAATATTGCTCCCCATGCTGCTACACTGGATGCCACGAATTATTTTCCGAAGGAAGTAAATTTGTGGAAGCTTATGGGAGACTTCAATCTCCATGGGATCACTGTGCCTGTGGAATATGGAGGACTTGGATTGGGTTATTTGTATCATTGCCTTGCAATGGAAGAAATCAGTCGTGCTTCTGGGTCTGTTGGTCTTTCATATGGAGCACATTCAAATCTATGTATCAATCAATTGGTGAGGCATGGCTCTGCTGCTCAGAAGGAGAAGTACCTACCAAAGTTAATCAGTGGGGAACATGTTGGGGCGCTGGCAATGAGTGAGCCAAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAAGCTGATAGAGTAACTGGGGGTTATCGGATAAATGGAAACAAAATGTGGTGCACGAATGGACCAGTTGCAGAGACACTGATTATTTATGCAAAAACAGATCCAAATGCTGGATCAAAAGGAATCACAGTTTTCATCATTGAAAAGGGCATGGAAGGCTTCAGCACTGCTCAAAAGCTGGACAAGCTTGGGATGCGGGGTAGTGATACATGTGAACTGGTTTTTGAGAATTGCTTTGTCCCTGAAGAGAATGTACTAGGGAAAGAAGGCAAAGGAGTTTATGTTTTGATGTCAGGATTAGATTTGGAGAGATTAGTCCTGGCAGCAGGCCCCATTGGCTTAATGCAAGCATCAATGGATGTCGTTCTTCCATATGTTCGTCAAAGAGAACAGTTTGGTCGTCCAATTGGTGAATTTCAGCTGATACAGGGGAAACTGGCTGATATGTACACTGCTTTGCAGTCTTCTAGGGCCTTTGTTTATTCTGTCGCAAAGAAATGTGACAATGGCGATGTTGACAAGAAGGACTGTGCTGGGGTCATTCTTTTCGCTGCAGAAAATGCAACTCAAGTTGCTCTCCAGGCAATCCAATGTCTTGGTGGGAATGGATATGTGAATGAATATCCTACTGGTCGCCTTCTGCGGGATGCAAAATTGTTTGAAATTGGTGCTGGCACAAGTGAAATAAGAAGGATGTTAATTGGTCGTGCCCTGTTTCAAGAGCAATAG___AGCTTATATTTTGCTGATGTTAGGTTGATTCTCTAGGCAGTTGAACAAAAATGGTAATTGGTCCCACATCTTCTATGGGATGCCAAATTGATCAATCGGTGTTGGTACAAGTGAAATAAGAAGGGGATGCTAATTGATGACGTCCATTTACAAAAGCAATAGAGTCAATATTAAGGTGATGCCATGTTGATCTTACGGCATTTGAACAAAATTTATCATTTGTAAGTAACAATATCTGTTTTTCTCCCTCTTTCATTTATAAGTGAAATGGCAGTGCCAACAGGCATTTACATGAAGAAATTCTTAATGTAAAAAATCTCAATGGTAATGATAAATCCATACCCATTGGTATTTGGAATCACTTTCAGAAGGAAGTCATTATTGTCAGGCAATAATATCAATCCCACAATTAAGGGGAGATCTCTAACCAAAATGTAACTAGAGTTTGTAGCATCATGTTAATACTCTTCCTTCAGAAACTATTGAAGTGGACCCAACAAACTTGATGGTTGCAGTGTTGTTTTTATTATATCTAATTTATTAAGAGAGTATGTCTAAACTGTATTAAATCCCA

Fln Alignment:

sp_v1.1_unigene2209___MWCTNGPVAETLIIYAKTDPNAGSKGITVFIIEKGMEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVLMSGLDLERLVLAAGPIGLMQASMDVVLPYVRQREQFGRPIGEFQLIQGKLADMYTALQSSRAFVYSVAKKCDNGDVDKKDCAGVILFAAENATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEIRRMLIGRALFQEQ
B8LPF0______________MWCTNGPVAETLIIYAKTDPNAGSKGITTFIIEKGMEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENILGKEGKGVYVLMSGLDLERLVLSAGPIGLMQASMDVVLPYVRQREQFGRPIGEFQLIQGKLADMYTALQSSRAFVYSVAKKCDNGEVDKKDCAGVILFAAENATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEIRRMLIGRALFQEQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
965			80	20	0.995493
966		80	20		0.995493
969	80		20		0.995493
972	20		80		0.995493
973		20	80		0.995493
977	20		20	20	0.994159
979	20		80		0.995493
980		80	20		0.995493
983		80		20	0.995493
986		25	75		0.996473
990			25	75	0.996473
2104	75	25			0.996473
2106	75	25			0.996473
2107		25	75		0.996473
2109	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain