SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2203

Length: 1603 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2203

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	set domain protein, putative (EC:2.1.1.43)	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	set domain	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	0.0	76%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	SET domain	IPR001214	-	76%
Blast2go	Pre-SET zinc-binding sub-group	IPR003606	-	76%
Blast2go	Pre-SET domain	IPR007728	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYK7

Fln msg: your sequence is longer than subject: 351 - 137

Fln protein: MLVSLEPCQPSVDQARPVHDLMDISRGEENIQIPIANELTSESYPSAFYYIPKSIVYQNAYINVSLARIGDDDCCSNCSGDCLESPITCACARETGGEYAYTRDGVLKKNFLEEALSIHMKPKPHHYFYCKDCPQERTKNENKPDSCKGHLIRKFVKECWSKCACSKHCGNRVVQRGIIRKLQVFFTSEGKGWGVRTLEDIPRGAFVCEYVGEILTNMELYNRNNERMGNEKHTYPVLLDADWCSEGVLKDEEALCLDATHYGNVARFINHRCYDANLIEIPVEVESPDRHYYHLAFFTTRKVEAMEELTWDYGIDFDDCDHPIKAFQCHCGSIHCRDAKRLHRRKTLHS*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCAAGAACTCAAATTCCTGATAAGGGTAAGTCAAATGCCGAAACCAAGGATCATGCTTCCTCGTCTACT_-_ATGTTAGTTAGTCTTGAACCATGCCAGCCTAGTGTTGATCAGGCAAGACCAGTGCATGATCTCATGGACATATCCAGGGGTGAAGAAAACATCCAAATCCCGATTGCTAATGAGTTGACCAGTGAAAGTTATCCCTCTGCCTTTTACTACATACCAAAAAGCATAGTTTATCAAAATGCATACATAAATGTTTCTCTTGCACGAATTGGAGATGACGATTGCTGTTCAAATTGCTCCGGTGATTGCTTAGAATCTCCTATTACTTGTGCATGTGCAAGAGAGACAGGAGGAGAGTATGCGTACACAAGGGATGGTGTCCTGAAGAAAAACTTCTTGGAGGAAGCACTTTCTATACATATGAAGCCTAAACCACACCATTATTTTTATTGTAAAGATTGTCCTCAGGAGAGAACGAAGAATGAGAATAAACCTGATTCCTGCAAGGGGCATTTGATCAGAAAATTTGTCAAGGAATGCTGGAGCAAATGTGCCTGCAGTAAGCACTGTGGGAACCGAGTTGTACAAAGAGGAATAATTCGCAAATTACAGGTCTTCTTTACTTCAGAAGGAAAAGGATGGGGTGTTCGTACACTTGAAGATATACCCAGAGGTGCTTTTGTGTGCGAGTATGTGGGTGAAATTTTGACAAACATGGAGTTGTACAATAGGAACAATGAAAGAATGGGAAATGAAAAGCACACATACCCAGTACTTTTGGATGCTGATTGGTGCTCTGAAGGTGTTCTCAAGGATGAAGAGGCCCTTTGCTTAGATGCCACACATTATGGCAATGTTGCACGGTTTATCAACCACAGGTGTTATGATGCCAATTTAATCGAGATCCCAGTTGAGGTGGAGTCCCCTGATCGTCATTACTACCATCTTGCTTTTTTCACTACAAGAAAGGTTGAAGCTATGGAAGAGCTTACATGGGATTATGGAATTGACTTTGACGACTGTGATCATCCTATCAAGGCATTTCAATGTCACTGTGGAAGCATCCATTGTAGAGATGCGAAAAGATTACATCGTCGTAAAACTTTGCACAGTTGA___AATTTTGAATGGATACATATGTATGTAAATTTTGTGGTTGCTAAGGTAACAATGATTTGGGTGTCAGTGAATGTATAAAAGGCAGCTGGAATCTTAAAAGAATATGTTTGTGGAATCTTAAAGGCCGATTAAACTATGTTTAGTTTCAATGTACTTGTAATGTAAAGTAGTAATTGCGGAATCTTGTTAGTCATTATAGACATAAATGTGGCATCTATAGATTTATGTTCTATATAAGCATGCTATTTGCTTGAAGCCTGAAGGTGTTCACAAAAGATCAAATGCTGCTGCATCCAAGTCATAATCTTCTAAAGTGAACCTGTGTCAATTTAATCTTATATTGTTGGCCGATGAAAAGAAAGAAAAATATTGCTCGAAAACAGTATGAGACTGCGAACAAGATAGCACTCGGTCGTTTTGTAATTGTCTGCTTGCTATGTCAAATTAACAAGTTTTTACTCTACGTTG

Fln Alignment:

sp_v1.1_unigene2203___LTNMELYNRNNERMGNEKHTYPVLLDADWCSE-----GVLKDEEALCLDATHYGNVARFINHRCYDANLIEIPVEVESPDRHYYHLAFFTTRKVEAMEELTWDYGIDFDDCDHPIKAFQCHCGSIHCRDAKRLHRRK
A9NYK7______________MTNSEQYYRNIEYREKNIHTYTMLLDADYDMEINHFKDDLNDDEALTLDATRYGNVSRFVNHRCGDPNLLLRPVQIDTRDTHYYHVAFFTARDIAKKEELTWDYNINFDD-KHEVKGFRCLCGSSLCRDKKNKFQKK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
991		10	90		0.90298
994		10		90	0.90298
996	90			10	0.90298
998		10	90		0.90298
1008	83			16	0.999991
1284		16		83	0.994512
1315		83		16	0.994512
1389	20	60		20	0.99255
1390	20	20		60	0.99255
1391	25			75	0.996473
1392		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain