SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2197

Length: 2130 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2197
CGTCGTGACCTTGGCTGTCACTCAATTATCAATGCTAGGACTCTGTTCATATTAGGGTTGTTATAAAGTAGAGGATTATTTCCACATTGCAGAGTCTCCATGGCTTACTCCAGTGATCATTTCTGTCTTGTATTTTTCATATGCACAGTTTTCTTCTCTTCGTCCGTCGGTGCCACCACAACTATAATAGTGGGAGCGGGCATGTCAGGAATAATGGCAGCAAAGACCTTATCCGACAATGGAGTGAAGGACTTTGTGATACTGGAAGCGACTAACCGGATTGGGGGAAGAATGCACAAAGAAACGGTGGGAGGTTATACAATAGAGATCGGCGCTAACTGGGTGGAGGGCGTTGGAGGCAAGATCATGAACCCCATATGGCCTCTCGCTAAGAAATACAAACTTCGGACATTCTATTCTGACTGGAGCAATCTCAGTTACAATATCTATCATCAAGAAGGAGGAATTTTGCCACAGTCATTGGTGGCACGACCATATGCTCTGGCAACTTCATCATCGGATTTCAGTTCAAAGCTGTCTGAATCGTTTCATAAGAGCGGGGAAGGAGACGTTTCCATTTTGGCATCTCAACGGACATTTGGACATGTGCCAGTAACGCCTTTGGAGATGGCCATCGACTTCTACTTTTATGATTTCGAAATTGCAGAACCTCCACGTGTGACGAGCTTAAAGAATGTGCTACCCAATCCCACTTTTGACGATTTTGGTGAAGATGAGTACTTCGTGGCCGACAGTCGAGGATACGAATACATCGTTCATAAAATAGCTGAGGAGTTCCTCGATTCTCACAACGGAGATATATCAGATAACCGTCTCAAGCTCAACCAGGTTGTGAGGGAAATCCAATATACAGACAAAGGCGTCAAGGTTGTGACAGAGAACGGTTCAGCTTACACTGCAGAGAACGTCATTGTTTCTGTCAGCGTGGGAGTTCTTCAAACCAAACTTATCAAGTTTAAACCTGATCTTCCTCTGTGGAAACTGCTGTCAATATACAGATGGGATATGGTTATCTACTGCAAGATATTTATGAAGTTTCCTTCTAAATTCTGGCCTACTGGACCTGGCACAGAATTTTTCATTTATGCCCATGAACAAAGAGGTTACTACAATTTCTGGCAGCATTTGGAGAACGAGTATCCCGGAGGCAATCTTCTGATGGTAACAGTCACTGACGATGAAGCCAGACGTATAGAACAACAGCCTGACCACGAGACGAAAATAGAAATAATGGCCGTTTTAAGGAAAATGTTCGGCTCTGATATCCCAGAGATGGAGGCAATACTTATTCCTAGATGGGGAAGAGATCGATTCTTCAAGGGAACTTACTCGAACTGGCCCATTGGTGTATCCACACATGACTTTGACAACATAAAGGCACCAGTTGGACCTATCTACTTCACTGGAGAACACACAAGTGAGAAATATAATGGTTATGTACACGGTGCTTATTTGGCAGGCATCGACACTGCCAATATGCTGTTGGACTGCATGAAAAGGAAGGGGCGTTGCACCCACATGAGATCCCAGGGACAAACTCTAGCAAAGAACGAGTCTTCTTGTAAAGCAGAGATTCAGAGGGAAAGGGAGGTTGGAAGAGAAGCGTGGATGAGTAAGGTGCAGGTTTTGGAGGACGCGCTTTCTCACAAATGCAAAACAGCATGAGAGAGGATAAGGGAAGCTCTGGAACTACTGGTCAACGAGAGGGTCTCCTTGAATTCAAAATGTCAGTGTGTCTCGGCATGTTGATGACAGCTGACACATGTACTGGTTGCAATAATTTCTCGTGTAGGCTTTTGATGTTACATCATATGTTTGGATACCGACAATAATTTCTCGTGTAGGCTTTTGATGTTACATCATTATGTTTGGATACCGACAATAATTTCTCGTGTAGGCTTTTTGATGTTACATGTTTGGATATTTTCAAATTAAAATATTAGTGGCCGTTGTGTTTTTTTTCTTAATAAAAAGGGACGTTCGCTTAACTTTCGACGTGGCCACTCAAGGAATGGTCAGTTGCCTGTGTATAAATTTGTAAAAATGTGGTAGTCTGAGAATTATGTTGTTTTTTGTTTTAAGAGTTATGGAAATTCTAGTTATATTTCG

Ace file of the UniGene sp_v1.1_unigene2197

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pao1, PAO, mpao1; polyamine oxidase1 (EC:1.5.3.14 1.5.3.15); K13366 polyamine oxidase (propane-1,3-diamine-forming) [EC:1.5.3.14]	-	-	55%
FL-Next	sp=Polyamine oxidase; Zea mays (Maize).	-	-	56%
Blast2go	polyamine oxidase precursor	-	-	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Polyamine oxidase (propane-1,3-diamine-forming).	EC:1.5.3.14	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Flavin amine oxidase	IPR001613	-	0.0	72%
Blast2go	Amine oxidase	IPR002937	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O64411

Fln msg:

Fln protein: MAYSSDHFCLVFFICTVFFSSSVGATTTIIVGAGMSGIMAAKTLSDNGVKDFVILEATNRIGGRMHKETVGGYTIEIGANWVEGVGGKIMNPIWPLAKKYKLRTFYSDWSNLSYNIYHQEGGILPQSLVARPYALATSSSDFSSKLSESFHKSGEGDVSILASQRTFGHVPVTPLEMAIDFYFYDFEIAEPPRVTSLKNVLPNPTFDDFGEDEYFVADSRGYEYIVHKIAEEFLDSHNGDISDNRLKLNQVVREIQYTDKGVKVVTENGSAYTAENVIVSVSVGVLQTKLIKFKPDLPLWKLLSIYRWDMVIYCKIFMKFPSKFWPTGPGTEFFIYAHEQRGYYNFWQHLENEYPGGNLLMVTVTDDEARRIEQQPDHETKIEIMAVLRKMFGSDIPEMEAILIPRWGRDRFFKGTYSNWPIGVSTHDFDNIKAPVGPIYFTGEHTSEKYNGYVHGAYLAGIDTANMLLDCMKRKGRCTHMRSQGQTLAKNESSCKAEIQREREVGREAWMSKVQVLEDALSHKCKTA*

Protein Length: 530

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATCAATGCTAGGACTCTGTTCATATTAGGGTTGTTATAAAGTAGAGGATTATTTCCACATTGCAGAGTCTCC_-_ATGGCTTACTCCAGTGATCATTTCTGTCTTGTATTTTTCATATGCACAGTTTTCTTCTCTTCGTCCGTCGGTGCCACCACAACTATAATAGTGGGAGCGGGCATGTCAGGAATAATGGCAGCAAAGACCTTATCCGACAATGGAGTGAAGGACTTTGTGATACTGGAAGCGACTAACCGGATTGGGGGAAGAATGCACAAAGAAACGGTGGGAGGTTATACAATAGAGATCGGCGCTAACTGGGTGGAGGGCGTTGGAGGCAAGATCATGAACCCCATATGGCCTCTCGCTAAGAAATACAAACTTCGGACATTCTATTCTGACTGGAGCAATCTCAGTTACAATATCTATCATCAAGAAGGAGGAATTTTGCCACAGTCATTGGTGGCACGACCATATGCTCTGGCAACTTCATCATCGGATTTCAGTTCAAAGCTGTCTGAATCGTTTCATAAGAGCGGGGAAGGAGACGTTTCCATTTTGGCATCTCAACGGACATTTGGACATGTGCCAGTAACGCCTTTGGAGATGGCCATCGACTTCTACTTTTATGATTTCGAAATTGCAGAACCTCCACGTGTGACGAGCTTAAAGAATGTGCTACCCAATCCCACTTTTGACGATTTTGGTGAAGATGAGTACTTCGTGGCCGACAGTCGAGGATACGAATACATCGTTCATAAAATAGCTGAGGAGTTCCTCGATTCTCACAACGGAGATATATCAGATAACCGTCTCAAGCTCAACCAGGTTGTGAGGGAAATCCAATATACAGACAAAGGCGTCAAGGTTGTGACAGAGAACGGTTCAGCTTACACTGCAGAGAACGTCATTGTTTCTGTCAGCGTGGGAGTTCTTCAAACCAAACTTATCAAGTTTAAACCTGATCTTCCTCTGTGGAAACTGCTGTCAATATACAGATGGGATATGGTTATCTACTGCAAGATATTTATGAAGTTTCCTTCTAAATTCTGGCCTACTGGACCTGGCACAGAATTTTTCATTTATGCCCATGAACAAAGAGGTTACTACAATTTCTGGCAGCATTTGGAGAACGAGTATCCCGGAGGCAATCTTCTGATGGTAACAGTCACTGACGATGAAGCCAGACGTATAGAACAACAGCCTGACCACGAGACGAAAATAGAAATAATGGCCGTTTTAAGGAAAATGTTCGGCTCTGATATCCCAGAGATGGAGGCAATACTTATTCCTAGATGGGGAAGAGATCGATTCTTCAAGGGAACTTACTCGAACTGGCCCATTGGTGTATCCACACATGACTTTGACAACATAAAGGCACCAGTTGGACCTATCTACTTCACTGGAGAACACACAAGTGAGAAATATAATGGTTATGTACACGGTGCTTATTTGGCAGGCATCGACACTGCCAATATGCTGTTGGACTGCATGAAAAGGAAGGGGCGTTGCACCCACATGAGATCCCAGGGACAAACTCTAGCAAAGAACGAGTCTTCTTGTAAAGCAGAGATTCAGAGGGAAAGGGAGGTTGGAAGAGAAGCGTGGATGAGTAAGGTGCAGGTTTTGGAGGACGCGCTTTCTCACAAATGCAAAACAGCATGA___GAGAGGATAAGGGAAGCTCTGGAACTACTGGTCAACGAGAGGGTCTCCTTGAATTCAAAATGTCAGTGTGTCTCGGCATGTTGATGACAGCTGACACATGTACTGGTTGCAATAATTTCTCGTGTAGGCTTTTGATGTTACATCATATGTTTGGATACCGACAATAATTTCTCGTGTAGGCTTTTGATGTTACATCATTATGTTTGGATACCGACAATAATTTCTCGTGTAGGCTTTTTGATGTTACATGTTTGGATATTTTCAAATTAAAATATTAGTGGCCGTTGTGTTTTTTTTCTTAATAAAAAGGGACGTTCGCTTAACTTTCGACGTGGCCACTCAAGGAATGGTCAGTTGCCTGTGTATAAATTTGTAAAAATGTGGTAGTCTGAGAATTATGTTGTTTTTTGTTTTAAGAGTTATGGAAATTCTAGTTATATTTCG

Fln Alignment:

sp_v1.1_unigene2197___IIVGAGMSGIMAAKTLSDNGVKDFVILEATNRIGGRMHKETVGGYTIEIGANWVEGVGGKIMNPIWPLAKK-YKLRTFYSDWSNLSYNIYHQEGGILPQSLVARPYALATXXXXXXXXXXXXFHKSGEGDVSILASQRTFGHVP---VTPLEMAIDFYFYDFEIAEPPRVTSLKNVLPNPTFDDFGEDEYFVADSRGYEYIVHKIAEEFL--DSHNGDISDNRLKLNQVVREIQYTDKGVKVVTENGSAYTAENVIVSVSVGVLQTKLIKFKPDLPLWKLLSIYRWDMVIYCKIFMKFPSKFWPTGPGTEFFIYAHEQRGYYNFWQHLENEYPGGNLLMVTVTDDEARRIEQQPDHETKIEIMAVLRKMF-GSDIPEMEAILIPRWGRDRFFKGTYSNWPIGVSTHDFDNIKAPVGPIYFTGEHTSEKYNGYVHGAYLAGIDTANMLLDCMKRK
O64411______________IVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
660	84		15		1.0
718		10	90		0.90298
929			16	83	0.994512
1188	85			14	0.993533
1545	90			10	0.90298
1571	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain