SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2192

Length: 1707 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2192

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to glutaredoxin family protein n=1 Tax=Vitis vinifera RepID=UPI0001983D8F	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	glutaredoxin family protein	-	-	70%

Source	InterPros	Term	Type	Identity
Blast2go	Glutaredoxin	IPR002109	-	70%
Blast2go	Thioredoxin fold	IPR012335	-	70%
Blast2go	Thioredoxin-like fold	IPR012336	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVK5

Fln msg:

Fln protein: MGCVVSAKLGNESVEENETFDYTTIFANANTTNHHHLVSLTSTSYGILSSGSRREVPSSNPAEPTEVVETINTWELMDGLEEESPRACHDAKEEFDNVGTLENNSQVLGVTRNVKSLGAGSPVGGRKFGFGKENERPKQGFESVKPAGVGPVSPLKDRSFLGRDVIQRKSPTDGPISDNSPTKGHVAENVGTETVCKKQVSKKISHGPLTELRIDSPVCFSYDSFKDCTGTSPMYSFKDCDGTSPLHTFNYCSGTSPMSSVKYCNGTSPLCSFKDCIGTSPQWSLKDCNGTGPLFDPELLASFETSLDNFEEDLKDSWHDVPENKGSLEDYEEKCPPGGQNAVVLYTTTLRGIRKTFEDCNTVRCVLESYGICFSERDVSMHMPFRNELEQLMGRIVTVPRLFIKGRYIGGAEEVLRLHEEDNLGGLLEGIPADTVGRVCDGCGGVRFVPCLECSGSCKLVDEVNNVMRCPECNENGLIQCPICC*

Protein Length: 487

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGGGCCGCAGCAAAGCTGCATTGGGGGGAAAATTGGGAGCG_-_ATGGGTTGTGTTGTATCAGCAAAGCTGGGCAATGAAAGTGTTGAGGAAAATGAAACCTTCGACTACACTACAATATTTGCTAATGCCAACACCACTAATCATCATCATCTGGTGTCTCTCACATCAACCTCCTATGGAATTCTCAGCAGTGGTAGCCGCAGGGAGGTCCCCAGTTCCAATCCCGCCGAGCCAACTGAAGTTGTGGAGACCATCAATACCTGGGAGCTCATGGATGGGCTAGAGGAGGAGAGCCCAAGGGCTTGTCATGATGCAAAAGAGGAGTTTGACAATGTGGGTACCCTGGAAAACAACAGTCAAGTATTGGGTGTCACCAGAAATGTGAAAAGCTTGGGTGCTGGTTCCCCAGTGGGTGGAAGAAAGTTCGGATTTGGTAAGGAAAATGAGAGGCCCAAACAGGGTTTTGAGTCTGTAAAGCCTGCTGGGGTTGGCCCGGTTAGCCCTTTGAAGGACAGGAGTTTTCTGGGCAGGGACGTTATTCAAAGAAAGAGTCCTACAGATGGGCCAATTTCAGACAATAGCCCTACAAAAGGGCACGTTGCAGAGAATGTGGGTACGGAGACTGTCTGCAAGAAACAGGTAAGTAAGAAAATTTCCCATGGACCCCTCACAGAATTGAGAATAGATAGCCCTGTGTGTTTTTCTTATGATAGCTTCAAGGATTGCACTGGGACTAGCCCTATGTATAGTTTCAAGGATTGTGATGGAACTAGCCCTCTGCATACTTTCAATTATTGCAGTGGGACTAGCCCTATGAGTAGTGTTAAGTATTGCAATGGGACTAGCCCTTTGTGCAGTTTCAAGGATTGCATTGGGACTAGTCCTCAGTGGAGTCTTAAGGATTGCAATGGGACTGGCCCTCTGTTTGATCCAGAGCTGCTGGCTTCTTTTGAGACTTCATTGGATAACTTTGAGGAAGACCTCAAAGATTCGTGGCATGATGTCCCAGAAAACAAGGGCTCTTTGGAGGATTATGAAGAAAAATGCCCTCCTGGAGGGCAGAATGCAGTGGTGCTCTATACCACCACTCTGAGGGGGATCAGGAAGACCTTTGAGGATTGCAACACTGTAAGATGTGTGCTTGAGAGCTATGGCATCTGCTTCAGTGAGAGGGATGTGTCCATGCATATGCCTTTTCGGAATGAGCTGGAACAGTTGATGGGCAGGATTGTCACCGTTCCAAGGCTGTTCATCAAGGGCAGATACATTGGTGGTGCAGAAGAGGTCTTGAGGCTTCACGAAGAGGACAACCTGGGTGGGCTTCTTGAAGGGATCCCAGCTGATACTGTAGGAAGGGTCTGTGATGGGTGTGGGGGAGTGAGGTTTGTGCCTTGCTTGGAGTGCAGTGGAAGCTGCAAGCTTGTTGATGAGGTTAACAATGTGATGAGATGTCCAGAATGCAATGAGAATGGCTTGATTCAATGCCCCATTTGTTGTTGA___TATGATGCACCTGTTCAGATTGTTGATTCTCTGCATCAGCAACTCCTGATGGGTCAAAGACACCCTTTGAAACTAGACTATCACATGGTGGATTCTGACGTGGACTGAACGGCCCCAGGTTCCATTAAGAAGAGCACTCAGGGGACGTGGATTCCACATTCCTGAAAGACATGAATTGTCTT

Fln Alignment:

sp_v1.1_unigene2192___CVVSAKLGNESVEENETFDYTTIFANANTTNHHHLVSLTSTSYGILSSGSRREVPSSNPAEPTEVVETINTWELMDGLEEESPRACHDAKEEFDNVGTLENNSQVLGVTRNVKSLGAGSPVGGRKFGFGKENERPKQGFESVKPAGVGPVSPLKDRSFLGRDVIQRKSPTDGPISDNSPTKGHVAENVGTETVCKKQVSKKISHGPLTELRIDSPVCFSYDSFKDCTGTSPMYSFKDCDGTSPLHTFNYCSGTSPMSSVKYCNGTSPLCSFKDCIGTSPQWSL------------KDCNGTGPLFDPELLASFETSLDNFEEDLKDSWHDVPENKGSLEDYEEKCPPGGQNAVVLYTTTLRGIRKTFEDCNTVRCVLESYGICFSERDVSMHMPFRNELEQLMGRIVTVPRLFIKGRYIGGAEEVLRLHEEDNLGGLLEGIPADTXXXXXXXXXXXXXXPCLECSGSCKLVDEVNNVMRCPECNENGLIQCPICC
A9NVK5______________CVVSAKLGNESLEENETFDYTTIFANPSTTNHHHLVSLTSTSYGILSSGSRREVPSSNPAEPTEVMETINIWELMDGLEEESPKACHDVKAEFDNVGTLENNSQVLGVNRNVKSLGAGSPMGGRKFGFGKENERPKQGFESVKPAGVVPVSSLKERSFVGRDIIQRKSPTDEPIADNGFTKGHVAENVGMETVCQKQVSKKISHGPLKDLRIDSPVRFSYDSFKDCTGTSPVYSFKDCDGASPLHSFKDCNGTSPTSTIKYCNGTSPLCSFKDCIGTSPLWSLKDWNGTSPMYSFKDCAGTSPLFDPELLASFETSLDNFEEDLKDSWGDVLENKDSLENYEEKCPPGGQNAVVLYTTTLRGIRKTFEDCNSVRCVLESYGICISERDVSMHMPFRNELEQLMGRIVPVPRLFIKGRYIGGAEEVLRLHEEDKFGGLLEGIPADTLGKVCDGCGGVRFVPCLECSGSCKLVDEDNSVVRCPDCNENGLIQCPICC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
201	16	83			0.994512
203	83		16		0.994512
204			16	83	0.994512
401	40	60			1.0
423		20		80	0.995493
562	50		50		1.0
1570	80	20			0.999996
1598		12		87	0.992554
1659	80		20		0.995493
1670			20	80	0.995493
1672	50		50		1.0
1677	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
165	176	ATC ATC ATC ATC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain