SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2167

Length: 2335 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2167
CGTCGTGACCTTGGCTGTCACTCAGGTTTTGAAGATGGCGGATTTGCAGCTCTGCCAAACCTCCCGAGCGCCGCAGAGCCATTCTACTTCTTCGATGATAATTCCAAGGCACGAGAACATAAATTCCTGTTTAGCGCTTGCGGTAGTCGAAGAATTTGAGCCAGTGGAGGCGAGCCAGAGTGGCGAGGGGTGGCCGTACGCACCGGAGGGGTGGCCAAAGCCCGGAGACAAATGGATTTGGAAAGTCGGTAGGCGGAAGCATGCCAAAGGCTACTGGCAGGACAGGAGCCTGCTCCTGCCCAAGCGCTTGCAGAAAGGAACGAGAAAGATCTGGTTTTGGAGTAAGAAGAGCATCGAGGAATATGTTAGGAATGAGTTCCCGGGGACTGATCTGGACAGTTTCTTCGGCTCCTTTCAGTGGAGGGTTCCCTGTTCTATTGATACTCCGACCCCTACTCGAGGGAAAACTTCTGTAAAGCGTGTGAGACAATCAGAATCGCGTGGGAATACTTCAGAGAGGAGATGTAAAGCTGGAAATTTGAAATGTGGACTAGAAACTGGCAAGACCAAATCTCTCAAGGCGATGAATTGTGATATATGCTGCATCGAATTTGGTTTTTGCCGTGAATGCTCTTGTATTCTCTGTGGGAAGGCTACTGATCAGAGTGTGGCAGACTACTGTACTATCAGATGTGAGGGAAAGCTGAATGAAGAATTTGTTTGTGGGCATGTTGCTCACCTAGAGTGTGCTCTACTTTGTCATATGGCAGGCGTGGAGCAAAGCATTGGTTTAGATGTGGAATATTATTGTAGACGCTGTGATAAAAAGACGAACCTGATGATGCTTGTTTCCAGCATACTTCATGCATCTGAATCTCTGGAAGTACGAGCTGATGTTGAGAAGAATTTGTGTCTTGCTTTACGTATCATACAGGGTACAAGGCAGATTGTGGGGAGAAGCCTGCAGAATAATATAGAGTTATCTCTAAAGAAGCTTCGCATTGGAATGAATCTGGCAGATATTGCGGAGTTACGTCAAAATTCAATAACAGTTGATGAAGACAATACTATTCAAAAGGTTAACTATCAGGTGGAGCCTCTAAATATTAACCCTGTATCTCTTGCAAACTCTAGAGATCAAGACAACAAAACAAGTGAATCTCCATTTGGCAATTCATTTGCAACTCGTACCCAACCCTATGACCTTTTGCAAGCAGCAAATACTCTACCTGATGTGACTTCTCAGAAAGGAAGTTCATTTGTTCATGATATATTACAGAGAAGATCGAGGTTGCTTCCAGAAGAAACAAATGGATCCTCGGATCTACTTAATTCACCGGTTCATATCACGGCTCTGAAATTTGAGAATAAAATTAACCAGGCTCTTCATGGCCTAAAAAAATCTCAAGAAGCAGAATACAAGCTTGCCCAAGAAAAACTATATTCCCAGAAAGATTATCTATTGTCCCTCTTTCAGGAGCTAGACATGGCAAACAATGAATTTACAAATGATTCATCTTCATCCTCTTTGGAAAACTTTGATGATCTGCTTGTAGGTGTTTCAGATCGAGTTGGAAGACTGAGGAAAGAGACTGCAAAATTTGGACAAATGCTAAGCATTACAAATGGGTTTGGCCGCACTCCTAAGGATATTCTAACAGATTACTTTGAAGTAGTGATGGAAGATGGAATGAACTAAATCTGCCCGTTATTTAGTAATTTTTGTAGCAGGAATATGCCTGCGTTTTCTTAGCTGTTCCTCTGCTCTAAATATTTCCCCTCTACATATCATTTCTTCTCCTCTAATCCGCAACTTCAGAATCATATGAATTATTTGTTTCTCATCCGGATGCATGGGTTAGGTTTTCCTTCAGGAACAGCAGTTCAAACACGGGTGGCTTTCTATTCTGGAATAGGTCTTGTTTGTATGGCTGGGAAAATTATTCCTGTATTTGTACGTAAGGCCCGTGTAACTTTTGGGGTAAAAGTTATTTGAAGCCTGTTTTGTGAACAGGATACCAAATGTAATATTTTGGTACATAAGTCGGATTCTAGCAACATAAAGTTGCTTGTTGCTTGTGGAAAGTCAATGGCAATTGCCTGAAGAGATTGAAATGTAATCCTTCTATCTGATAAAATGCTTGCAAAATTATGTGGCACACCATCCTTTTTACGTGAAATATTACCTGCCTCATTTTTTGTGATGATTTCCAGTCAAGTAGGATTAGGGGCCAGTGACTTGAATACAATGAATAATCTCTACCAGTGGCATTCCATTCACTTTATAGAAAATGTAACATTAACATATTCATGATGGAATTATGATAACTGGGTT

Ace file of the UniGene sp_v1.1_unigene2167

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTQ4_RICCO	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein binding	-	-	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1423, plant	IPR004082	-	0.0	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPI0

Fln msg: atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 555 - 575

Fln protein: MADLQLCQTSRAPQSHSTSSMIIPRHENINSCLALAVVEEFEPVEASQSGEGWPYAPEGWPKPGDKWIWKVGRRKHAKGYWQDRSLLLPKRLQKGTRKIWFWSKKSIEEYVRNEFPGTDLDSFFGSFQWRVPCSIDTPTPTRGKTSVKRVRQSESRGNTSERRCKAGNLKCGLETGKTKSLKAMNCDICCIEFGFCRECSCILCGKATDQSVADYCTIRCEGKLNEEFVCGHVAHLECALLCHMAGVEQSIGLDVEYYCRRCDKKTNLMMLVSSILHASESLEVRADVEKNLCLALRIIQGTRQIVGRSLQNNIELSLKKLRIGMNLADIAELRQNSITVDEDNTIQKVNYQVEPLNINPVSLANSRDQDNKTSESPFGNSFATRTQPYDLLQAANTLPDVTSQKGSSFVHDILQRRSRLLPEETNGSSDLLNSPVHITALKFENKINQALHGLKKSQEAEYKLAQEKLYSQKDYLLSLFQELDMANNEFTNDSSSSSLENFDDLLVGVSDRVGRLRKETAKFGQMLSITNGFGRTPKDILTDYFEVVMEDGMN*

Protein Length: 556

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTGAAG_-_ATGGCGGATTTGCAGCTCTGCCAAACCTCCCGAGCGCCGCAGAGCCATTCTACTTCTTCGATGATAATTCCAAGGCACGAGAACATAAATTCCTGTTTAGCGCTTGCGGTAGTCGAAGAATTTGAGCCAGTGGAGGCGAGCCAGAGTGGCGAGGGGTGGCCGTACGCACCGGAGGGGTGGCCAAAGCCCGGAGACAAATGGATTTGGAAAGTCGGTAGGCGGAAGCATGCCAAAGGCTACTGGCAGGACAGGAGCCTGCTCCTGCCCAAGCGCTTGCAGAAAGGAACGAGAAAGATCTGGTTTTGGAGTAAGAAGAGCATCGAGGAATATGTTAGGAATGAGTTCCCGGGGACTGATCTGGACAGTTTCTTCGGCTCCTTTCAGTGGAGGGTTCCCTGTTCTATTGATACTCCGACCCCTACTCGAGGGAAAACTTCTGTAAAGCGTGTGAGACAATCAGAATCGCGTGGGAATACTTCAGAGAGGAGATGTAAAGCTGGAAATTTGAAATGTGGACTAGAAACTGGCAAGACCAAATCTCTCAAGGCGATGAATTGTGATATATGCTGCATCGAATTTGGTTTTTGCCGTGAATGCTCTTGTATTCTCTGTGGGAAGGCTACTGATCAGAGTGTGGCAGACTACTGTACTATCAGATGTGAGGGAAAGCTGAATGAAGAATTTGTTTGTGGGCATGTTGCTCACCTAGAGTGTGCTCTACTTTGTCATATGGCAGGCGTGGAGCAAAGCATTGGTTTAGATGTGGAATATTATTGTAGACGCTGTGATAAAAAGACGAACCTGATGATGCTTGTTTCCAGCATACTTCATGCATCTGAATCTCTGGAAGTACGAGCTGATGTTGAGAAGAATTTGTGTCTTGCTTTACGTATCATACAGGGTACAAGGCAGATTGTGGGGAGAAGCCTGCAGAATAATATAGAGTTATCTCTAAAGAAGCTTCGCATTGGAATGAATCTGGCAGATATTGCGGAGTTACGTCAAAATTCAATAACAGTTGATGAAGACAATACTATTCAAAAGGTTAACTATCAGGTGGAGCCTCTAAATATTAACCCTGTATCTCTTGCAAACTCTAGAGATCAAGACAACAAAACAAGTGAATCTCCATTTGGCAATTCATTTGCAACTCGTACCCAACCCTATGACCTTTTGCAAGCAGCAAATACTCTACCTGATGTGACTTCTCAGAAAGGAAGTTCATTTGTTCATGATATATTACAGAGAAGATCGAGGTTGCTTCCAGAAGAAACAAATGGATCCTCGGATCTACTTAATTCACCGGTTCATATCACGGCTCTGAAATTTGAGAATAAAATTAACCAGGCTCTTCATGGCCTAAAAAAATCTCAAGAAGCAGAATACAAGCTTGCCCAAGAAAAACTATATTCCCAGAAAGATTATCTATTGTCCCTCTTTCAGGAGCTAGACATGGCAAACAATGAATTTACAAATGATTCATCTTCATCCTCTTTGGAAAACTTTGATGATCTGCTTGTAGGTGTTTCAGATCGAGTTGGAAGACTGAGGAAAGAGACTGCAAAATTTGGACAAATGCTAAGCATTACAAATGGGTTTGGCCGCACTCCTAAGGATATTCTAACAGATTACTTTGAAGTAGTGATGGAAGATGGAATGAACTAA___ATCTGCCCGTTATTTAGTAATTTTTGTAGCAGGAATATGCCTGCGTTTTCTTAGCTGTTCCTCTGCTCTAAATATTTCCCCTCTACATATCATTTCTTCTCCTCTAATCCGCAACTTCAGAATCATATGAATTATTTGTTTCTCATCCGGATGCATGGGTTAGGTTTTCCTTCAGGAACAGCAGTTCAAACACGGGTGGCTTTCTATTCTGGAATAGGTCTTGTTTGTATGGCTGGGAAAATTATTCCTGTATTTGTACGTAAGGCCCGTGTAACTTTTGGGGTAAAAGTTATTTGAAGCCTGTTTTGTGAACAGGATACCAAATGTAATATTTTGGTACATAAGTCGGATTCTAGCAACATAAAGTTGCTTGTTGCTTGTGGAAAGTCAATGGCAATTGCCTGAAGAGATTGAAATGTAATCCTTCTATCTGATAAAATGCTTGCAAAATTATGTGGCACACCATCCTTTTTACGTGAAATATTACCTGCCTCATTTTTTGTGATGATTTCCAGTCAAGTAGGATTAGGGGCCAGTGACTTGAATACAATGAATAATCTCTACCAGTGGCATTCCATTCACTTTATAGAAAATGTAACATTAACATATTCATGATGGAATTATGATAACTGGGTT

Fln Alignment:

sp_v1.1_unigene2167___NSCLALAVVEE--FEPVEASQSGEGWPYAPEGWPKPGDKWIWKVGRRKHAKGYWQDRSLLLPKRLQKGTRKIWFWSKKSIEEYVRNEFPGTDLDSFFGSFQWRVPCS----IDTPTPTRGKTS--VKRVRQSES--RGNTSER-RCKAGNLKCGLETGKTKSLKAMNCDICCIEFGFCRECSCILCGKATDQSVADYCTIRCEGKLNEEFVCGHVAHLECALLCHMAGVEQSIGLDVEYYCRRCDKKTNLMMLVSSILHASESLEVRADVEKNLCLALRIIQGTRQIVGRSLQNNIELSLKKLRIGMNLADI-AELRQNSITVDE---DNTIQKVNYQVEPLNINPVSL-------------ANSRDQDNKTSESPFGNSFATRTQPYDLLQAANTLPDVTSQKGSSFVHDILQRRSRLLPEETNGSSDLLNSPVHITALKFENKINQALHGLKKSQEAEYKLAQEKLYSQKDYLLSLFQELDMANNEFTNDSSSSSLENFDDLLVGVSDRVGRLRKETAKFGQMLSITNGFGRTPKDILTDYFEV
B8LPI0______________SDCETLKTLENVSLEPVGPSQGGEGFPYAPGEWPNPGDKWKWKVGRRRTASGFWMDRYLILPKTLQRGKKQAWFTSKSAVEKYLKKSFPDEDHQTFFASFQWQIPCTPLSLVSAEDNNEGVIAYDLKRLREPDSICDGQTPVKIHCKAGNAKCRLETGKGKFVNALDCDICCVESGFCRECSCILCGKSIDQELGEYYFVQCEGNQGEDVICGHVAHLECAVICQTAGVVRSIGLDVEYYCRRCDKKTDLLKHVLGLIPTPELSKTGADFESNLNLALRLVQGTQQLGARILENLFQKAVKKLQSGMQLQDIFGDLRYSSVTVNAGKVDSVKENIPSLMQPSSNTPILLTKLGCKAGIHSSPVSISAATNEGADLDYGIRSASRTMCSDLLQSRTLAPDMSSEKGT----HIHLKKTRLLSEDTRRASDLQNLPDCIRALKLENMVFQSLHMLRQSQETEFKLAQEKLFAQKDFVLSLFQQLEGTSCEFAN-NPSPSLEN-------------SAEKEHEKFVNMLAIANGFGSTPKGFLHHYFGI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1296	80			20	0.999996
1297		20	80		0.999996
1300			20	80	0.999996
1301	20		80		0.999996
1303		22		77	0.999999
1306		77		22	0.999999
1307	77		22		0.999999
1309	77	22			0.999999
1310	77			22	0.999999
1312	77			22	0.999999
1313	77	22			0.999999
1316	77			22	0.999999
1317	77	22			0.999999
1621			10	90	0.90298
1622	90		10		0.90298
1680			88	11	0.923564
1716		66		33	1.0
1723		12		87	0.992554
1789		90	10		0.90298
1795	90	10			0.90298
1797	90			10	0.90298
1798			10	90	0.90298
1799		90	10		0.90298
1800	90	10			0.90298
1802			10	90	0.90298
1806	10			90	0.90298
1810	10	90			0.90298
2171		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain