SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2134

Length: 1567 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2134 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MEE13; myosin heavy chain-related	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	49%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	0.0	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9T2F7

Fln msg: your sequence is shorter than subject: 327 - 658

Fln protein: SENTVINESAECSHGDTVEKHSDSLNTSSEEQANADDSRKVLAQALQEKVQALLLLSQQEERHFLEKSTNAALEEKNEELRQKLLRVTKEKVAALMEVAQLRQVCQNLQEHGRELIPGSKQQHNLNTNSTGASNEKDWRVKHLLKRSYLKYWLRGIDITGFKANTHTLEGDSSSEASKPKDAMDFARLKVENASLQESMANMEHLTTSIHRLRLALLKVKEDTSFSAASEGALEVINGIINEARHIKTALGSSLPVSWSADSTSDLPDNSDSEIAPDSDDHTITGLDSVSAAGIELVELLILAADLQKIELMQMSKQALLLENGPA*

Protein Length: 328

Fln nts: AAGTGAGAATACTGTTATTAATGAAAGTGCAGAATGTTCTCACGGAGATACAGTGGAAAAGCATTCTGATTCCCTAAACACTAGTTCCGAAGAACAAGCAAATGCTGATGACAGCAGGAAGGTCCTTGCTCAAGCTTTACAGGAAAAAGTTCAGGCACTATTGCTGCTTTCACAACAAGAGGAAAGGCATTTTCTAGAGAAAAGCACAAATGCAGCTCTTGAGGAAAAAAATGAAGAACTTCGGCAGAAACTATTGCGAGTCACTAAGGAAAAGGTGGCAGCACTTATGGAGGTAGCGCAGCTAAGACAAGTATGCCAGAACTTACAAGAGCATGGAAGAGAGCTAATTCCTGGGTCAAAACAACAGCATAATTTGAATACTAATTCCACGGGTGCTTCCAATGAGAAAGATTGGAGGGTAAAACATTTGCTGAAACGATCTTATCTCAAATACTGGCTGAGGGGCATAGACATTACTGGGTTTAAAGCTAATACTCACACCCTTGAAGGTGATAGTAGTTCTGAGGCAAGCAAGCCTAAGGATGCCATGGACTTTGCCAGATTAAAGGTCGAAAATGCTTCGCTTCAGGAAAGCATGGCAAACATGGAACATTTGACAACATCTATCCATCGACTTCGGCTAGCTCTTCTCAAAGTAAAAGAAGATACAAGTTTTTCTGCTGCTAGTGAAGGTGCTTTAGAAGTAATTAATGGTATAATCAATGAGGCTCGGCATATTAAGACAGCACTAGGTAGCTCCCTTCCTGTTAGTTGGTCAGCAGACAGCACTTCAGATCTACCCGATAATTCAGATTCAGAGATTGCACCTGACAGTGACGATCACACAATTACTGGACTAGACAGTGTTTCAGCTGCTGGGATTGAGCTTGTAGAACTTTTGATCTTGGCTGCTGATCTACAGAAAATAGAGCTCATGCAGATGTCAAAACAAGCCTTGCTTCTTGAGAATGGCCCAGCCTAG___ACAAGTTCAAACCTTACGTAAAAAAGGTTTCTAGCATCCTCGGTAAGATGTTTGACATGTATCTTTGGTGTTTTTCTTGGATGGACAATGAATATTTTTCATGTTGGGTGACGAGAAATGCAGTCCAGATTTTATTTCATAATCTACACTAACATCGTTAGAGGTTGTTATCCTGGGTACATCAAAGTTTACAAAGAGACAGCTTGGCATCTCTCTACATGTAAGCTGATCACAAAGCGTGCAAAATATCAATATCAATTCTGGACCCCATAATGTTATAGGTGGTGGTGGAGGTGAAACTATCAAGATTCTTCCTTGTGTCTAACCTGTCCATTTTAGTGAAGTGGCAGGCAGGTAGAAATGACTAGAAGTAGTCTACTGAGAATGCTCAGTGGAAATTTCAAATTCCAGGCTTCATTGGTTTTTATTATGTATGCCCACCGCATAAAAGTAACTGATGGCTTTGTAGTTGGTGGATTATTAAACATTTGTTAATAAGATGCCTACTACTGTATCTACTATATTGTATACTTCCATGAAGAACTCTTGAATCTTACAGCTTCAGAAGCTAGATAATGTTAAAAA

Fln Alignment:

sp_v1.1_unigene2134___DDSRKVLAQALQEKVQALLLLSQQEERHFLEKSTNAALEEKNEELRQKLLRVTKEKVAALMEVAQLRQVCQNLQEHGRELIPGSKQQHNLNTNSTGA---SNEKDWRVKHLLKRSYLKYWL--RGIDITGFKANTHTLEGDSSSEASKPKDAMDFARLKVENASLQESMANMEHLTTSIHRLRLALLKVKEDTSFSAASEGALEVINGIINEARHIKTALGSSLPVSWSADSTSDLPDNSDSEIAPDSD-DHTITGLDSVSAAGIELVELLILAADL
B9T2F7______________ENSSEALAQVLQEKVAALLLLSQQEERHLLERNVNAVLQKKMEELQRNLLQVTNEKVKALVELAQLKQAYQQLHEK----ISHGIQEGNLSIDKVERRHFTHDKDGRLRNLLKRTYLKRWMGTSGIGVNEEEAHLNN-EGNFSS---RTHSSIDFARMKIENATLKESMESMEHLTSSIHRLRCALLKVKESAACEGTCVGVLEALHDIVSEAKLLKTAFGSSLPISWSAEAVDTSTGGSTHNEPGDLDEDSSYEKMDSVSAAGFEMVELLILAAQI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
951		10		90	0.90298
1070			87	12	0.992554
1283	80	20			0.995493
1284		20		80	0.995493
1285	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain