SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2132

Length: 847 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2132

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methylesterase n=1 Tax=Solanum lycopersicum RepID=Q6ED34_SOLLC	-	-	1.0e-24	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	indoleacetic acid conjugate metabolic process	GO:0033473	Biological Process	64%
Blast2go	shoot development	GO:0048367	Biological Process	64%
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	64%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
151		33	66		0.997452
153		33	33		0.997753
402	33	66			1.0
429	66		33		1.0
439		69		30	1.0
465	18	81			0.999994
508	87		12		0.992554
509			87	12	0.992554
512	85	14			0.993533
546	14		85		0.993533
548	85		14		0.993533
627		18		81	0.999994
671		25		75	1.0
715		25	75		1.0
726	28		71		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain