SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2129

Length: 1336 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2129 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SSF3_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	glycogenin glucosyltransferase -related	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 90 aas, putative chimeric sequence, your sequence is shorter than subject: 362 - 567

Fln protein: YKDQPNFDKRFALTLNKLYAWDLVQYERVVMLDADNLFLQKTDELFQCGQFCAAFINPCIFHTGLFVLQPSKQVFNDMLKQLANGQKNQDGLDQGFLTGYFDDLLDKPMFHPAVNGTAQNGLYRLPLGYQMDASYYYLKLKWNVPCGPNSVITFPGASWLKPWYWWSWPVLPLGLSWHQQRLNTIGYDDEIPIFIAEVIIYLVIMIMMKVRGFTLSMKSYFYRGPEREYWRHPVVMKALVTSYLLAGYLVPCLLIPKTIHPLLGWGLYLLGSLSLVYSTIRSYPISVLAALTPWMCICGTLAVMANPHYPNGVVRALSVCAYAAVGAPLAWTGIVRVVRSLDSSIDRESQSPLLDQITKAC*

Protein Length: 363

Fln nts: ATACAAAGACCAACCCAATTTCGACAAGCGTTTTGCTCTTACACTCAACAAACTATACGCATGGGATCTCGTCCAGTATGAGCGTGTTGTCATGCTCGATGCAGACAATCTGTTTCTGCAGAAAACCGATGAGCTCTTCCAGTGTGGCCAGTTCTGTGCCGCATTCATTAACCCCTGCATTTTTCACACCGGGCTCTTCGTTTTACAGCCATCGAAGCAGGTATTCAATGATATGTTGAAACAGCTTGCCAACGGCCAAAAAAACCAGGATGGTTTGGATCAAGGCTTTCTAACGGGGTATTTTGACGATTTGCTGGACAAACCCATGTTCCATCCAGCAGTAAATGGAACCGCACAGAATGGGCTTTATCGCCTTCCGCTGGGATACCAGATGGACGCATCCTATTACTATTTGAAGCTGAAATGGAACGTACCATGCGGACCCAACAGCGTCATCACATTCCCAGGGGCTTCTTGGCTTAAACCCTGGTACTGGTGGTCATGGCCTGTATTGCCACTGGGCCTCTCTTGGCACCAGCAGCGGTTAAATACAATAGGATATGATGATGAAATACCAATTTTCATAGCAGAGGTGATTATATACCTGGTAATTATGATCATGATGAAAGTCAGGGGATTCACTCTCAGCATGAAAAGCTACTTTTACAGAGGCCCTGAGAGGGAATACTGGAGGCATCCTGTGGTGATGAAAGCACTGGTAACATCATACTTGCTGGCAGGTTATCTGGTTCCCTGTCTGTTGATACCCAAAACAATACATCCATTATTGGGATGGGGCCTTTATCTGCTGGGTTCTTTGTCTCTGGTGTACAGTACCATCAGATCATATCCAATTTCAGTTCTGGCAGCTTTAACGCCATGGATGTGTATATGCGGTACGCTTGCAGTGATGGCTAATCCCCATTATCCTAATGGGGTTGTCAGGGCCTTATCAGTGTGTGCTTATGCAGCTGTGGGAGCTCCATTAGCTTGGACAGGCATTGTCAGAGTGGTGAGGTCTCTGGATTCCTCCATTGACAGAGAATCCCAATCGCCACTCTTGGATCAGATTACAAAAGCCTGTTAA___TAATATATTCGTTCAGCATCAATTGGGTTCATCCGTTCTCATTCTTTCGAGGCTTCTACTGTATCCATTTTCTTCATAAATGGATGGTGGATGGATGCATGTATGTATGTTACAGGTTTCAAAATTCTCGGTCAGCGATTGAGCGCTCCTTTAAAATTAACCTTTTTAAAAGGTTAATGTGGCTTTAATTTAAGTAGGTGTGTATACGGTTTTATTTAAAAATTTAATTGGTTTATTTTATTCGGTCAG

Fln Alignment:

sp_v1.1_unigene2129___KRFALTLNKLYAWDLVQYERVVMLDADNLFLQKTDELFQCGQFCAAFINPCIFHTGLFVLQPSKQVFNDMLKQLANGQKNQDGLDQGFLTGYFDDLLDKPMFHP-----AVNGTAQNGLYRLPLGYQMDASYYYLKLKWNVPCGPNSVITFPGASWLKPWYWW-SWPVLPLGLSWHQQRL-------NTIGYDDEIPIFIAEVIIYLVIMIMM
B8LLU5______________KRFWGVYTKLKIFNMTNYKKVVYLDADTVVLRSIDDLFQCRKFCANLKHSERLNSGVMVVEPSESVFKDMMAKVTT-LPSYTGGDQGFLNSYYGDFPNARLFEPNLSADELKSRPEPSMERLSTLYNADVGLYMLANKWMVDGSELRVVHYT-LGPLKPWDWWTAWLLKPVDL-WQGFRVKLEGSLPGTEGENDPHKQLIVRILFVLPLLVAL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
616			10	90	0.90298
622		10		90	0.90298
625	10			90	0.90298
626	10			90	0.90298
627			10	90	0.90298
628		90	10		0.90298
634		88	11		0.923564
637	88		11		0.923564
642	12		87		0.992554
652		14		85	0.993533
656	14	85			0.993533
781		14		85	0.993533
855		33		66	0.997452
856	66	33			0.997452
859			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain