SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2119

Length: 1581 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2119

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sphingolipid delta 4 desaturase DES-1 n=1 Tax=Solanum lycopersicum RepID=Q8S459_SOLLC	-	-	74%
FL-Next	tr=Putative sphingolipid delta 4 desaturase DES-1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	74%
Blast2go	sphingolipid delta 4 desaturase	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	sphingolipid biosynthetic process	GO:0030148	Biological Process	0.0	81%
Blast2go	sphingolipid delta-4 desaturase activity	GO:0042284	Molecular Function	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Fatty acid desaturase, type 1	IPR005804	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: Q8S459

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 315 - 332

Fln protein: FFLGETDEPHASRRREILAVHPEIKELFGPDSWAFPKIVAAVGIQIWAATLLNDASLLQITVVAYFFGSFLNHNLFLAIHELSHNLAFSTPIYNRLLGIFANLPIGVPMSVTFQKYHLEHHRYQGVDGIDMDIPSYTEGHVVSNTFCKMLWVLLQLFFYAFRPLVLNPKPPGLWEASNFLVQLTFDATLLYFCGWKSFAYLILATFLGGGMHPMAGHFISEHYVFQKGQETYSYYGPLNMLTWSVGYHNEHHDFPRIPGRKLHKVKKIAPEFYEGFSYYKSWSQVIYMYIMDHTVGPFSRIKRKTHSSGHEKKD*

Protein Length: 316

Fln nts: ATGGGACACAACAGAATTACTTTTCGTCGTGACCTTGGCTGTCACTCACTTTTGGGTTCAAGGACCGCTTCCCGCATGTGCCATGGAACAGATATTCCAGACAGAGCAGAACCAAGATCATGGGGTATAGTCGAAGACTTTTGCATTGATGTATATTTTAATGCATTGACACCGCCCAATACGGTTGCAGAGCAGAGCCAGCACATTGGTGTTTTAAGATACGGCGGCCTGGTTCGCTTTTCAACCGCCAAGTGCCACCAAAGTAAGGTACCTTCTACTAACCAGAATGAAACATGCAACACGCAGCGAGCAGTCTCGTTAGAAATCCTCGTGCATGATTGGTACTGATTTTCAGATCTGATTCGTGATATCTGAATCGCATGACAATGGCTGCAATGGGGA_-_ATGATTTTTTTTGGGAGAGACTGATGAACCCCACGCGAGTCGCAGGAGGGAAATACTGGCCGTCCATCCTGAGATCAAGGAGTTGTTTGGACCCGATTCATGGGCTTTTCCAAAGATTGTCGCAGCTGTTGGCATTCAAATATGGGCTGCTACATTGCTGAATGATGCAAGCTTGTTACAGATTACTGTTGTGGCATATTTCTTTGGGTCGTTTTTGAATCATAATCTGTTTCTAGCAATACATGAGCTTAGCCACAATTTAGCTTTTTCAACACCTATCTATAATCGTCTGTTAGGTATTTTTGCTAACCTTCCAATTGGTGTTCCCATGTCCGTTACTTTTCAAAAGTATCATCTAGAGCACCACAGGTACCAAGGAGTTGATGGGATTGACATGGACATTCCCAGTTACACAGAGGGGCACGTGGTTTCAAATACATTTTGCAAAATGTTGTGGGTTTTACTTCAGCTTTTTTTCTATGCCTTTAGGCCATTGGTTTTGAATCCCAAGCCTCCTGGCCTTTGGGAGGCAAGCAATTTTTTAGTGCAACTAACCTTTGATGCAACTCTTTTATACTTCTGTGGTTGGAAGTCCTTTGCATACCTTATTTTGGCAACATTTCTGGGTGGGGGAATGCATCCTATGGCTGGGCATTTCATTTCAGAGCATTATGTCTTCCAAAAAGGACAAGAGACTTACTCATACTACGGGCCTTTGAACATGTTAACATGGAGTGTTGGATACCACAATGAACACCATGACTTTCCAAGGATTCCTGGTAGAAAGCTTCATAAAGTGAAGAAGATAGCACCTGAGTTTTATGAAGGATTTAGTTATTATAAATCATGGTCACAAGTAATTTATATGTATATTATGGATCACACTGTTGGGCCTTTCAGCAGGATAAAAAGGAAAACCCATTCAAGTGGACATGAGAAGAAGGATTAACATTTACTTCCTATCTTTTGCAATATAACAAGTGGATGTGGGAAGAAGGATTGATGTTTACATCCTACCTTTTGTTGTTGTATTGAAGTGGATGTGAGAAGGATTGACATTTACTTCCCACCTTTTTTTGTAGTGATTCTTTTGGTTCTCCTCAATTCATTTTTGGAGGCATATGGCAGTCAGGATTCTTTGGTTGATTCTAGAAGTTTTGTTATTGAGACATTGTTCAG

Fln Alignment:

sp_v1.1_unigene2119___FFLGETDEPHASRRREILAVHPEIKELFGPDSWAFPKIVAAVGIQIWAATLLNDASLLQITVVAYFFGSFLNHNLFLAIHELSHNLAFSTPIYNRLLGIFANLPIGVPMSVTFQKYHLEHHRYQGVDGIDMDIPSYTEGHVVSNTFCKMLWVLLQLFFYAFRPLVLNPKPPGLWEASNFLVQLTFDATLLYFCGWKSFAYLILATFLGGGMHPMAGHFISEHYVFQKGQETYSYYGPLNMLTWSVGYHNEHHDFPRIPGRKLHKVKKIAPEFYEGFSYYKSWSQVIYMYIMDHTVGPFSRIKRKTHSSGHEKK
Q8S459______________FFWSYTDEPHASRRRQILSQYPQIKQLFGPDPFAFLKISGVVLLQLWTATFLHDATWLKILIVAYFFGSFLNHNLFLAIHELSHNLAFSTPTYNRWLGIFANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSQTEAHVVKNVLAKSIWVILQLFFYAFRPLFLKPKPPGLWEFINFTIQLSLDGAMVYFWGWKSLAYLILSTFVGGGMHPMAGHFISEHYVFKPEQETYSYYGPLNLMTWSVGYHNEHHDFPRIPGSKLYKVKEIAPEYYENLDAYKSWSQVIYMYIMDRTVGPFSRMKRKLSTKANKSE

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
278		60	40		1.0
279		38		61	1.0
644	66	33			1.0
648	66		33		1.0
649	66			33	1.0
650			33	66	1.0
653	66	33			1.0
655			66	33	1.0
656	66		33		1.0
660			33	66	1.0
661	66			33	1.0
662		33	66		1.0
663	33	66			1.0
922		88		11	0.923564
938	90	10			0.90298
940			88	11	0.923564
942	88		11		0.923564
943	88			11	0.923564
947	88	11			0.923564
950			12	87	0.992554
951			12	87	0.992554
952		12		87	0.992554
959	77		11		0.968132
960	88			11	0.923564
962			11	88	0.923564
963	88		11		0.923564
969			11	88	0.923564
971	88	11			0.923564
974		88		11	0.923564
975	88	11			0.923564
981	11			88	0.923564
1006			10	90	0.90298
1008		10		90	0.90298
1011	90			10	0.90298
1012			10	90	0.90298
1019			12	87	0.992554
1020			12	87	0.992554
1021		12		87	0.992554
1024			87	12	0.992554
1027	87			12	0.992554
1065		12		87	0.992554
1082	87	12			0.992554
1083			12	87	0.992554
1084		12	87		0.992554
1085	12			87	0.992554
1086		87	12		0.992554
1088			12	87	0.992554
1089	12	87			0.992554
1090		87	12		0.992554
1091	85			14	0.993533
1092	85		14		0.993533
1094	85	14			0.993533
1098	71	14			0.984337
1304		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain