SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2117

Length: 2705 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2117
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGTTTTTCTGAACTCTAATACGCGAGGAATTCTGATTTCCCATCGTAACAGCTCTGTTGCATGCATATTTACCTTTCAGTTGGCCATCTTGGGCGTCCTGTGTTATTTATTCGACTACCCTCTTTGAACTTCAGGCTGTGGATCATTCATGTTGCGCCTTTCATAGGTTTGAAGCGGTTGCTTTCAGCGTTTGGAAAACTGATGTATGTTATCCGGTTCTGAGGGATTATAATTGCATCTATACTGGCCGTCAGCTATCTAGTTCGAGGGTTTTGTGAATTGGGTCGGTGTGCAGAATGAGGTGGTCTTTTGCAGTTCTAGGGCTTTTGATTTTTTTGTTGATCACTGCGCCATTGTCTGAAGCAAAAGAAGATCTTTATAAGATACTTGGGGTGGAAAAGAACGCTAGTCAGCGTGATATTCAGAAAGCATTTCACAAGCTTTCCTTGAAATATCATCCTGATAAAAATAAGAGTAAGAATGCCCAGGCAAAGTTTTCTGAAATAAATAACGCATACGAGATCCTGTCCGATGAGGAGAAAAGGAAAAACTATGACACGTATGGCAACGAGCAGGGAAATTCGAGGTTTGAAGGTGGTGGGTCTGGATATGGGTCAAGCCACTTCAATTTTGGCGGCCAAAATAGTGAGCACTCCACTTTCAGGCAGGGCAGATCTCAAGGAAGGAGTGGAAGAGAGAGCTTTCAGCATTTCACATTCCCTTCTCAAGAATATAGTGGGGGTAAGCAATTCTTTTACATTTGACTTTGGTGGCTCTGACTTCATGGGAGACATTATGTCAAATTTTTTTGGATCTGGAAAGAGTGGCCAGGAAAATGGGAATCCATTTGGAAGTTTTAGCGGCTCACAGGGAGGAGCCAAAAGTGGTTTTTGGAATAACCAAGCATCCCAGTACTCTCATCAAATTCAAGTGCTGGACGCTAAGAACTTTAAAAAGAAAGTTACAGATCAGGGTTTAACATGGTTGTTGATGTTTTACTCTCCGTCATCAAAAGGCTACCAAGAATTGGAGGGAATCCTGGATCAGATTGCTAACTCATTTCAAGGAGTTGTGAAGGTTGGTGCTATCAATTGCCAAATTCAACAAAAATTATGCAAAGACCAAAATGCTTGGCCTCAGAAAACACCTAAATTATATGTTTACTCCATCAGAAGCAATGGGAAAGGCTCTATGATCGAATACACTGGGGAGTGGAACGTGAAGGATGTCAAGAACTATTGCTTAGATCTATTGCCAAGGTTTTCGAAAAGAATTGATAGCAATGATATTAATGATTTGTTGAAGGCATCACAGAAGCTACCTCGGGTGTTATTACTCACCACAAAAAAGCAGACCCCGGCAATTTGGCGAGTTCTTAGTGGGTTATATTATAATAGAGTACTATTCTATGACGTAGAGGTTGCTGATGCATCACATCCAATTGCTAGGAAGTTTGGAGTCAAGGCACTTCCAGCTATGATAGGAATTCTGTCTAATGGTGAATTACTTGTGCTGGCAAGTGGGAGTGGCTTCGAAAAACTAGGGTCACAAAAGGTAGAAGAACTTGGAAAGCTTATTGAAAATTTAGAAAAGAGGAATTTGGAGGTTAGTGATTCCAAAACAAACAGTCAATCAAACCAAGGTGCAAAGGGATATATTTCTCCGCTTACCAAGGAAAATGAAGACATGTTATGTGGAGAAGATACACCTCTCTGTATGTTTGGCGTGTTTGGGTCATCCAGAGGAAAGGAGAAAGTTGAAACGGTCCTGAAGGCAGTCTCCCAAAAAACCTTGACAAGAGGAGGAAAACAGTTTGACGAGGTAAAGGACCCAATATCATACTCCATTGTGGATGCTGCAAAACAAAAGGCATTTTTACTCGCTTTTGACAAAGCTGGCTTCAAAGGCATGGATGCCTTTTTGGTTGCTTACAAGCCACGCAAAGGAAGATCTACTATTTACAAGGGCCCTCTTACAATAGAGGATGCAGAAAGGTTTATTAGTGGGGTTTTGAATGGAGATGTTCAGTTCACAAAAGTTCTTCGGAAACCAGTGTTGTCCTAGAGGGAGGAGTTGATAGATTCAAGATCCCCTCGAGCCATATTTGTTTGATAGATCAACTTATTCTGGTTTTTGTATTATAGTTCATTTCTCTGTCAAATTAATTCACTTTTTTGTCAAAATTAATATTAAAGAAGGTTCAATTGAATCCCTACCTGGAAGGGATCAAATCATCTAGTGAAGTCCCAATTAACACGAGCCTTTATAAATCAAGAGTGCTGTGAGCATTTCGCTTGAGTGTCGATCAGTGCTAATAGTTAAAGGAATTATCGAGAAGCGTGCCATCAGCGTTTCGCTTCGGCCTAATAGCAGAACGAAGCATTCAAGTTCCTCAGCACAATATCTCAAGTTATTTATCAAAGGTGATATTTAATGATCAAATAACAGAGCACCAAGAGATCCCAGGCACGGCGATTAATTATCACCTTTTATAATTGAATCTAAATATGGCTTGGGTATTGACCACATAATGAATTTGACCAGCATGGATTATTTATTAAATGTGCCTCTTGACAATTTCAGAAACTTGGATGATTGGATAATGACGGAAGTTGCGCATACTAAAACTGTGATTTGAAAATTTTATAGATTAAGAATG

Ace file of the UniGene sp_v1.1_unigene2117

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=D7L7P9_ARALY	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	dnaj heat shock n-terminal domain-containing protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	response to heat	GO:0009408	Biological Process	59%
Blast2go	pollen tube growth	GO:0009860	Biological Process	59%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	59%
Blast2go	endoplasmic reticulum lumen	GO:0005788	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin fold	IPR012335	-	0.0	59%
Blast2go	Thioredoxin-like fold	IPR012336	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSG5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 182 aas, putative chimeric sequence, your sequence is shorter than subject: 156 - 349

Fln protein: MRWSFAVLGLLIFLLITAPLSEAKEDLYKILGVEKNASQRDIQKAFHKLSLKYHPDKNKSKNAQAKFSEINNAYEILSDEEKRKNYDTYGNEQGNSRFEGGGSGYGSSHFNFGGQNSEHSTFRQGRSQGRSGRESFQHFTFPSQEYSGGKQFFYI*

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGTTTTTCTGAACTCTAATACGCGAGGAATTCTGATTTCCCATCGTAACAGCTCTGTTGCATGCATATTTACCTTTCAGTTGGCCATCTTGGGCGTCCTGTGTTATTTATTCGACTACCCTCTTTGAACTTCAGGCTGTGGATCATTCATGTTGCGCCTTTCATAGGTTTGAAGCGGTTGCTTTCAGCGTTTGGAAAACTGATGTATGTTATCCGGTTCTGAGGGATTATAATTGCATCTATACTGGCCGTCAGCTATCTAGTTCGAGGGTTTTGTGAATTGGGTCGGTGTGCAGA_-_ATGAGGTGGTCTTTTGCAGTTCTAGGGCTTTTGATTTTTTTGTTGATCACTGCGCCATTGTCTGAAGCAAAAGAAGATCTTTATAAGATACTTGGGGTGGAAAAGAACGCTAGTCAGCGTGATATTCAGAAAGCATTTCACAAGCTTTCCTTGAAATATCATCCTGATAAAAATAAGAGTAAGAATGCCCAGGCAAAGTTTTCTGAAATAAATAACGCATACGAGATCCTGTCCGATGAGGAGAAAAGGAAAAACTATGACACGTATGGCAACGAGCAGGGAAATTCGAGGTTTGAAGGTGGTGGGTCTGGATATGGGTCAAGCCACTTCAATTTTGGCGGCCAAAATAGTGAGCACTCCACTTTCAGGCAGGGCAGATCTCAAGGAAGGAGTGGAAGAGAGAGCTTTCAGCATTTCACATTCCCTTCTCAAGAATATAGTGGGGGTAAGCAATTCTTTTACATTTGA___CTTTGGTGGCTCTGACTTCATGGGAGACATTATGTCAAATTTTTTTGGATCTGGAAAGAGTGGCCAGGAAAATGGGAATCCATTTGGAAGTTTTAGCGGCTCACAGGGAGGAGCCAAAAGTGGTTTTTGGAATAACCAAGCATCCCAGTACTCTCATCAAATTCAAGTGCTGGACGCTAAGAACTTTAAAAAGAAAGTTACAGATCAGGGTTTAACATGGTTGTTGATGTTTTACTCTCCGTCATCAAAAGGCTACCAAGAATTGGAGGGAATCCTGGATCAGATTGCTAACTCATTTCAAGGAGTTGTGAAGGTTGGTGCTATCAATTGCCAAATTCAACAAAAATTATGCAAAGACCAAAATGCTTGGCCTCAGAAAACACCTAAATTATATGTTTACTCCATCAGAAGCAATGGGAAAGGCTCTATGATCGAATACACTGGGGAGTGGAACGTGAAGGATGTCAAGAACTATTGCTTAGATCTATTGCCAAGGTTTTCGAAAAGAATTGATAGCAATGATATTAATGATTTGTTGAAGGCATCACAGAAGCTACCTCGGGTGTTATTACTCACCACAAAAAAGCAGACCCCGGCAATTTGGCGAGTTCTTAGTGGGTTATATTATAATAGAGTACTATTCTATGACGTAGAGGTTGCTGATGCATCACATCCAATTGCTAGGAAGTTTGGAGTCAAGGCACTTCCAGCTATGATAGGAATTCTGTCTAATGGTGAATTACTTGTGCTGGCAAGTGGGAGTGGCTTCGAAAAACTAGGGTCACAAAAGGTAGAAGAACTTGGAAAGCTTATTGAAAATTTAGAAAAGAGGAATTTGGAGGTTAGTGATTCCAAAACAAACAGTCAATCAAACCAAGGTGCAAAGGGATATATTTCTCCGCTTACCAAGGAAAATGAAGACATGTTATGTGGAGAAGATACACCTCTCTGTATGTTTGGCGTGTTTGGGTCATCCAGAGGAAAGGAGAAAGTTGAAACGGTCCTGAAGGCAGTCTCCCAAAAAACCTTGACAAGAGGAGGAAAACAGTTTGACGAGGTAAAGGACCCAATATCATACTCCATTGTGGATGCTGCAAAACAAAAGGCATTTTTACTCGCTTTTGACAAAGCTGGCTTCAAAGGCATGGATGCCTTTTTGGTTGCTTACAAGCCACGCAAAGGAAGATCTACTATTTACAAGGGCCCTCTTACAATAGAGGATGCAGAAAGGTTTATTAGTGGGGTTTTGAATGGAGATGTTCAGTTCACAAAAGTTCTTCGGAAACCAGTGTTGTCCTAGAGGGAGGAGTTGATAGATTCAAGATCCCCTCGAGCCATATTTGTTTGATAGATCAACTTATTCTGGTTTTTGTATTATAGTTCATTTCTCTGTCAAATTAATTCACTTTTTTGTCAAAATTAATATTAAAGAAGGTTCAATTGAATCCCTACCTGGAAGGGATCAAATCATCTAGTGAAGTCCCAATTAACACGAGCCTTTATAAATCAAGAGTGCTGTGAGCATTTCGCTTGAGTGTCGATCAGTGCTAATAGTTAAAGGAATTATCGAGAAGCGTGCCATCAGCGTTTCGCTTCGGCCTAATAGCAGAACGAAGCATTCAAGTTCCTCAGCACAATATCTCAAGTTATTTATCAAAGGTGATATTTAATGATCAAATAACAGAGCACCAAGAGATCCCAGGCACGGCGATTAATTATCACCTTTTATAATTGAATCTAAATATGGCTTGGGTATTGACCACATAATGAATTTGACCAGCATGGATTATTTATTAAATGTGCCTCTTGACAATTTCAGAAACTTGGATGATTGGATAATGACGGAAGTTGCGCATACTAAAACTGTGATTTGAAAATTTTATAGATTAAGAATG

Fln Alignment:

sp_v1.1_unigene2117___MRWSFAVLGLLIFLLITAPLSEAKEDLYKILGVEKNASQRDIQKAFHKLSLKYHPDKNK-SKNAQAKFSEINNAYEILSDEEKRKNYDTYGNEQGNSRFEGGGSGYGSSHFNF-----------GGQNSE
C0PSG5______________MRLARGLLLLFLFAVSYVGRSIAGKNLYDVLQVPKGASEDQMKKAYRKLALKYHPDKNPGNEEATKRFAEINNAYEVLTDREKREIYDRYG-EEGLKQHAASGGGRGGGGMNFQDIFSSFFGGGGGQSEE

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
22	25	50			0.995533
24			25	75	0.996473
25	25	75			0.996473
33	25			75	0.996473
34	25		75		0.996473
42	75			25	0.996473
43		75		25	0.996473
46	75			25	0.996473
580	12		87		0.992554
682	50		50		1.0
1200	12		12	75	0.975346
1201		12	12	75	0.975346
1364	16		83		0.994512
1375	16			83	0.994512
1378	16			83	0.994512
1381	16			83	0.994512
1384	20			80	0.995493
1386	75	25			0.996473
1388		75	25		0.996473
1390		75	25		0.996473
1657		33		66	1.0
1781	33		66		1.0
1800	83			16	0.994512
1823	16		83		0.994512
2029	75	25			0.996473
2181	16			83	0.994512
2183			16	83	0.994512
2184			16	83	0.994512
2222	11		11	77	0.968132
2224		11	11	77	0.968132
2225	11		11	77	0.968132
2226		11	88		0.923564
2322	86		8	4	0.999539
2323	91			8	0.999807
2326		8	86		0.999539
2333		8	91		0.999807
2400	13		86		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain