SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2115

Length: 1441 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2115 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9ST76_RICCO	-	-	2.0e-14	37%
FL-Next	tr=Putative p23 co-chaperone; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	40%
Blast2go	dna binding	-	-	8.49733e-15	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG56

Fln msg: your sequence is longer than subject: 388 - 240

Fln protein: MQQHPPQVQRSQQLVTASHLPQLNAASHSSNQQINSQMMSHPNPLQHLQMLQNHQRQQQQQHQQLQRKMMLPAGMNSFAPMGVGNISGVNSMSGVGMPISGGPQGGLANMGLSGMNSVVGMGGINGISTSMGGISGLTNIGQHSGMGNMMGHNFRSGTMNPQAVAALKTRMVQGRGRPGSITNSSIRNSFENMQGISVGNQTHNSVGLSMLGQSQARGNMSSLQRASGTGMGPPKIVTSGMGGVPGQSLYLNQQLSSQSQQINSQQQLNQQPQLNVQQQMNLPQPPSSQQPLSSQPLLNVQHQPQINQQQQLNSQSQLNSQQQLNPQQLNSQPQLNPQQMGAGNLVSVGGPTSPQLSSQTLGSVGSITSSPMELQSANRGNSIGTGQ*

Protein Length: 389

Fln nts: GATGCAGCAACATCCACCACAAGTTCAAAGGTCTCAACAGCTTGTCACTGCCAGTCATCTTCCCCAGCTAAATGCAGCAAGTCACAGCTCAAACCAACAGATTAATTCACAAATGATGAGTCATCCTAATCCGTTGCAGCATCTTCAGATGCTTCAAAATCACCAAAGGCAGCAGCAGCAGCAGCATCAGCAATTGCAGAGGAAGATGATGCTTCCAGCAGGCATGAATTCTTTTGCACCAATGGGGGTAGGGAACATAAGTGGTGTGAACAGTATGAGTGGTGTTGGTATGCCTATCAGTGGTGGTCCTCAAGGAGGTCTTGCAAACATGGGCCTAAGTGGTATGAATAGTGTTGTGGGTATGGGAGGCATAAATGGAATTTCAACATCCATGGGAGGCATATCTGGTTTGACTAATATTGGCCAGCACTCTGGTATGGGAAATATGATGGGACATAACTTTCGATCTGGGACCATGAATCCACAAGCAGTAGCAGCATTGAAAACACGCATGGTTCAAGGCAGAGGACGCCCAGGTTCAATCACAAATTCTTCCATAAGAAATTCATTTGAAAATATGCAGGGAATATCTGTGGGTAATCAAACTCATAACTCAGTGGGTTTGTCAATGCTGGGACAATCTCAAGCTAGAGGCAATATGAGTTCCTTACAAAGAGCTTCAGGTACAGGGATGGGTCCTCCAAAAATTGTAACATCTGGTATGGGTGGTGTACCTGGACAGAGCCTCTATCTCAACCAACAACTGAGTAGTCAGTCACAGCAAATTAATTCCCAACAGCAGCTAAATCAACAGCCACAGTTGAATGTGCAGCAACAAATGAATTTGCCACAACCCCCCTCGTCTCAACAGCCTTTGAGTTCACAACCCTTATTGAATGTACAGCACCAACCTCAAATCAATCAACAGCAGCAACTTAATTCACAGTCACAATTAAATTCACAGCAACAACTTAATCCTCAACAGCTCAACTCACAACCACAACTGAATCCCCAACAGATGGGTGCTGGAAATCTTGTCTCTGTTGGAGGTCCAACTAGTCCTCAGCTTAGTTCTCAAACATTGGGATCTGTTGGTAGCATAACAAGTTCGCCCATGGAGTTGCAGAGTGCAAACCGAGGGAATTCAATTGGAACAGGACAGTAA___ATTGGGTTTTCCTAGGAGATGATTGGTATGGTGATCCTTTCATTTAAATACCTGTCATGATGCCGAATTATCACATACAAATAATGTATGTTAAATGTTATATCCATCTCTCCAACTCTAGCAGGCATGGGAAAATATAATTTGTTACCTGAATTAGACATTTTTTTGCGGATGGTTCAGTCAATAATCATGGTTATTTTATGGTCTACATTGCGCTGAGCTTGAGCTTTTCTGAGAATGTAAATGAAGCAAGATGCTTCTGAGTTGTATATAGTC

Fln Alignment:

sp_v1.1_unigene2115___PAGMNSFAPMGVGNISGVNSMSGVGMPISGGPQGGLANMG-LSGMNSVVGMGGINGISTSMGGISGLTNIGQHSGMGNMMG
Q1XG56______________PAGDADFGGMDFSGMGGMGGMGGMGGMGGMGGLGGMEGMGGLAGMGGMGGMGGLAG----MGGMSGLAGMGGMGGLGGMGG

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
239	33		66		1.0
504			20	80	0.995493
505		20		80	0.995493
509			20	80	0.995493
511		20	80		0.995493
512	20	80			0.995493
513		20		80	0.995493
516		20		80	0.995493
617	80		20		0.995493
634	20		80		0.995493
699		25	75		0.996473
701		25		75	0.996473
702	25	75			0.996473
840			33	66	0.997452
841	33			66	0.997452
845			33	66	0.997452
848	33	66			0.997452
849		66	33		0.997452
855			33	66	0.997452
856	66		33		0.997452
860	33	66			0.997452
862			33	66	0.997452
863	33		66		0.997452
865	66		33		0.997452
1075		83	16		0.994512
1148			16	83	0.994512
1149	83			16	0.994512
1152		83		16	0.994512
1153	83		16		0.994512
1155	83			16	0.994512
1156		83	16		0.994512
1157		83	16		0.994512
1158	83			16	0.994512
1160		83		16	0.994512
1161	83		16		0.994512
1164	83			16	0.994512
1165	16	83			0.994512
1208		85	14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1256	1273	TGC TGC TGC TGC TGC TGC	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain